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Sample GSM2308588 Query DataSets for GSM2308588
Status Public on Oct 14, 2016
Title ChIP-seq from DOHH2 (ENCLB658ING)
Sample type SRA
 
Source name Homo sapiens DOHH2 immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: DOHH2
biomaterial_type: immortalized cell line
description: established from the pleural effusion of a 60-year-old man with refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma in 1990
biosample encode accession: ENCBS662OGM (SAMN05733865)
age: 60 year
dev stage: adult
Sex: male
health state: refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma
lab: Bradley Bernstein, Broad
link: ENCBS662OGM at ENCODE; https://www.encodeproject.org/ENCBS662OGM/
link: Derived from ENCODE donor ENCDO352AAA; https://www.encodeproject.org/ENCDO352AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_1179; http://web.expasy.org/cellosaurus/CVCL_1179
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR741STU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR741STU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR742WWB
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB658ING
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Sep 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE86743 ChIP-seq from DOHH2 (ENCSR741STU)
Relations
BioSample SAMN05733865
SRA SRX2157009
Named Annotation GSM2308588_ENCFF260QXC_peaks_GRCh38.bed.gz
Named Annotation GSM2308588_ENCFF805DYK_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2308588_ENCFF486BQZ_signal_p-value_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2308588_ENCFF058TEO_peaks_hg19.bigBed 2.1 Mb (ftp)(http) BIGBED
GSM2308588_ENCFF260QXC_peaks_GRCh38.bed.gz 793.0 Kb (ftp)(http) BED
GSM2308588_ENCFF486BQZ_signal_p-value_GRCh38.bigWig 430.4 Mb (ftp)(http) BIGWIG
GSM2308588_ENCFF574VYA_signal_p-value_hg19.bigWig 366.3 Mb (ftp)(http) BIGWIG
GSM2308588_ENCFF606HWF_peaks_hg19.bed.gz 773.4 Kb (ftp)(http) BED
GSM2308588_ENCFF769BXV_peaks_GRCh38.bigBed 2.1 Mb (ftp)(http) BIGBED
GSM2308588_ENCFF805DYK_fold_change_over_control_GRCh38.bigWig 316.4 Mb (ftp)(http) BIGWIG
GSM2308588_ENCFF913QAA_fold_change_over_control_hg19.bigWig 319.9 Mb (ftp)(http) BIGWIG
GSM2308588_ENCLB658ING_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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