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Sample GSM2308588 Query DataSets for GSM2308588
Status Public on Oct 14, 2016
Title ChIP-seq from DOHH2 (ENCLB658ING)
Sample type SRA
Source name Homo sapiens DOHH2 immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: DOHH2
biomaterial_type: immortalized cell line
description: established from the pleural effusion of a 60-year-old man with refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma in 1990
biosample encode accession: ENCBS662OGM (SAMN05733865)
age: 60 year
dev stage: adult
Sex: male
health state: refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma
lab: Bradley Bernstein, Broad
link: ENCBS662OGM at ENCODE;
link: Derived from ENCODE donor ENCDO352AAA;
link: ENCODE dbxrefs Cellosaurus CVCL_1179;
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
biological replicate number: 2
technical replicate number: 1
experiment encode accession: ENCSR741STU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR742WWB
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB658ING
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
Submission date Sep 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE86743 ChIP-seq from DOHH2 (ENCSR741STU)
BioSample SAMN05733865
SRA SRX2157009
Named Annotation GSM2308588_ENCFF260QXC_peaks_GRCh38.bed.gz
Named Annotation GSM2308588_ENCFF805DYK_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2308588_ENCFF486BQZ_signal_p-value_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2308588_ENCFF058TEO_peaks_hg19.bigBed 2.1 Mb (ftp)(http) BIGBED
GSM2308588_ENCFF260QXC_peaks_GRCh38.bed.gz 793.0 Kb (ftp)(http) BED
GSM2308588_ENCFF486BQZ_signal_p-value_GRCh38.bigWig 430.4 Mb (ftp)(http) BIGWIG
GSM2308588_ENCFF574VYA_signal_p-value_hg19.bigWig 366.3 Mb (ftp)(http) BIGWIG
GSM2308588_ENCFF606HWF_peaks_hg19.bed.gz 773.4 Kb (ftp)(http) BED
GSM2308588_ENCFF769BXV_peaks_GRCh38.bigBed 2.1 Mb (ftp)(http) BIGBED
GSM2308588_ENCFF805DYK_fold_change_over_control_GRCh38.bigWig 316.4 Mb (ftp)(http) BIGWIG
GSM2308588_ENCFF913QAA_fold_change_over_control_hg19.bigWig 319.9 Mb (ftp)(http) BIGWIG
GSM2308588_ENCLB658ING_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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