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GEO accession:
Sample GSM2308568
Query DataSets for GSM2308568
Status
Public on Oct 14, 2016
Title
ChIP-seq from Karpas-422 (ENCLB415MTR)
Sample type
SRA
Source name
Homo sapiens Karpas-422 immortalized cell line
Organism
Homo sapiens
Characteristics
antibody: H3K27ac
line: Karpas-422
biomaterial_type: immortalized cell line
description: Karpas422- Human B cell non-Hodgkin lymphoma
biosample encode accession: ENCBS171YVY (SAMN05733852)
age: 73 year
dev stage: adult
Sex: female
health state: human B cell non-Hodgkin's lymphoma
lab: Bradley Bernstein, Broad
link: ENCBS171YVY at ENCODE;
https://www.encodeproject.org/ENCBS171YVY/
link: Derived from ENCODE donor ENCDO354AAA;
https://www.encodeproject.org/ENCDO354AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_1325;
http://web.expasy.org/cellosaurus/CVCL_1325
Extracted molecule
genomic DNA
Extraction protocol
extraction method: see document
general protocol:
https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2500
Description
https://www.encodeproject.org/experiments/ENCSR660IQS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR660IQS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR367UDO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB415MTR
size range: 200-600
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Sep 09, 2016
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL16791
Series (1)
GSE86733
ChIP-seq from Karpas-422 (ENCSR660IQS)
Relations
BioSample
SAMN05733852
SRA
SRX2156969
Supplementary file
Size
Download
File type/resource
GSM2308568_ENCLB415MTR_README.txt.gz
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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