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Sample GSM2308554 Query DataSets for GSM2308554
Status Public on Oct 14, 2016
Title ChIP-seq from OCI-LY1 (ENCLB563BJY)
Sample type SRA
 
Source name Homo sapiens OCI-LY1 immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: OCI-LY1
biomaterial_type: immortalized cell line
description: established from the bone marrow of a 44-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL; diffuse large cell), stage 4B at relapse in 1983
biosample encode accession: ENCBS945KYE (SAMN05733874)
age: 44 year
dev stage: adult
Sex: male
health state: B cell lymphoma
lab: Bradley Bernstein, Broad
link: ENCBS945KYE at ENCODE; https://www.encodeproject.org/ENCBS945KYE/
link: Derived from ENCODE donor ENCDO350AAA; https://www.encodeproject.org/ENCDO350AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_1879; http://web.expasy.org/cellosaurus/CVCL_1879
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR597UDW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR597UDW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR569IIN
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB563BJY
size range: 200-600
nucleic acid starting quantity: 9.675
nucleic acid starting quantity units: ng
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Sep 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE86726 ChIP-seq from OCI-LY1 (ENCSR597UDW)
Relations
BioSample SAMN05733874
SRA SRX2156979

Supplementary file Size Download File type/resource
GSM2308554_ENCFF208IAK_peaks_GRCh38.bigBed 3.1 Mb (ftp)(http) BIGBED
GSM2308554_ENCFF209PUB_fold_change_over_control_hg19.bigWig 275.2 Mb (ftp)(http) BIGWIG
GSM2308554_ENCFF236QNS_signal_p-value_GRCh38.bigWig 644.6 Mb (ftp)(http) BIGWIG
GSM2308554_ENCFF396QLJ_peaks_hg19.bed.gz 1.3 Mb (ftp)(http) BED
GSM2308554_ENCFF445WJB_peaks_GRCh38.bed.gz 1.3 Mb (ftp)(http) BED
GSM2308554_ENCFF644BIA_fold_change_over_control_GRCh38.bigWig 283.2 Mb (ftp)(http) BIGWIG
GSM2308554_ENCFF798WAK_signal_p-value_hg19.bigWig 589.8 Mb (ftp)(http) BIGWIG
GSM2308554_ENCFF970LDX_peaks_hg19.bigBed 3.1 Mb (ftp)(http) BIGBED
GSM2308554_ENCLB563BJY_README.txt.gz 1.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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