|
| Status |
Public on Oct 14, 2016 |
| Title |
ChIP-seq from OCI-LY1 (ENCLB563BJY) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens OCI-LY1 immortalized cell line
|
| Organism |
Homo sapiens |
| Characteristics |
antibody: H3K27ac
line: OCI-LY1
biomaterial_type: immortalized cell line
description: established from the bone marrow of a 44-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL; diffuse large cell), stage 4B at relapse in 1983
biosample encode accession: ENCBS945KYE (SAMN05733874)
age: 44 year
dev stage: adult
Sex: male
health state: B cell lymphoma
lab: Bradley Bernstein, Broad
link: ENCBS945KYE at ENCODE; https://www.encodeproject.org/ENCBS945KYE/
link: Derived from ENCODE donor ENCDO350AAA; https://www.encodeproject.org/ENCDO350AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_1879; http://web.expasy.org/cellosaurus/CVCL_1879
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
extraction method: see document
general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR597UDW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR597UDW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR569IIN
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB563BJY
size range: 200-600
nucleic acid starting quantity: 9.675
nucleic acid starting quantity units: ng
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Sep 09, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE86726 |
ChIP-seq from OCI-LY1 (ENCSR597UDW) |
|
| Relations |
| BioSample |
SAMN05733874 |
| SRA |
SRX2156979 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2308554_ENCFF208IAK_peaks_GRCh38.bigBed |
3.1 Mb |
(ftp)(http) |
BIGBED |
| GSM2308554_ENCFF209PUB_fold_change_over_control_hg19.bigWig |
275.2 Mb |
(ftp)(http) |
BIGWIG |
| GSM2308554_ENCFF236QNS_signal_p-value_GRCh38.bigWig |
644.6 Mb |
(ftp)(http) |
BIGWIG |
| GSM2308554_ENCFF396QLJ_peaks_hg19.bed.gz |
1.3 Mb |
(ftp)(http) |
BED |
| GSM2308554_ENCFF445WJB_peaks_GRCh38.bed.gz |
1.3 Mb |
(ftp)(http) |
BED |
| GSM2308554_ENCFF644BIA_fold_change_over_control_GRCh38.bigWig |
283.2 Mb |
(ftp)(http) |
BIGWIG |
| GSM2308554_ENCFF798WAK_signal_p-value_hg19.bigWig |
589.8 Mb |
(ftp)(http) |
BIGWIG |
| GSM2308554_ENCFF970LDX_peaks_hg19.bigBed |
3.1 Mb |
(ftp)(http) |
BIGBED |
| GSM2308554_ENCLB563BJY_README.txt.gz |
1.8 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
