|
Status |
Public on Oct 14, 2016 |
Title |
ChIP-seq from OCI-LY1 (ENCLB563BJY) |
Sample type |
SRA |
|
|
Source name |
Homo sapiens OCI-LY1 immortalized cell line
|
Organism |
Homo sapiens |
Characteristics |
antibody: H3K27ac line: OCI-LY1 biomaterial_type: immortalized cell line description: established from the bone marrow of a 44-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL; diffuse large cell), stage 4B at relapse in 1983 biosample encode accession: ENCBS945KYE (SAMN05733874) age: 44 year dev stage: adult Sex: male health state: B cell lymphoma lab: Bradley Bernstein, Broad link: ENCBS945KYE at ENCODE; https://www.encodeproject.org/ENCBS945KYE/ link: Derived from ENCODE donor ENCDO350AAA; https://www.encodeproject.org/ENCDO350AAA/ link: ENCODE dbxrefs Cellosaurus CVCL_1879; http://web.expasy.org/cellosaurus/CVCL_1879
|
Extracted molecule |
genomic DNA |
Extraction protocol |
extraction method: see document general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
https://www.encodeproject.org/experiments/ENCSR597UDW/ *************** biological replicate number: 1 technical replicate number: 1 description: experiment encode accession: ENCSR597UDW assay title: ChIP-seq assembly: hg19, GRCh38 possible controls: ENCSR569IIN encode release date: 2014-07-11 lab: Bradley Bernstein, Broad library encode accession: ENCLB563BJY size range: 200-600 nucleic acid starting quantity: 9.675 nucleic acid starting quantity units: ng
|
Data processing |
See GSM*_README.txt supplementary file linked below
|
|
|
Submission date |
Sep 09, 2016 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE86726 |
ChIP-seq from OCI-LY1 (ENCSR597UDW) |
|
Relations |
BioSample |
SAMN05733874 |
SRA |
SRX2156979 |
Supplementary file |
Size |
Download |
File type/resource |
GSM2308554_ENCFF208IAK_peaks_GRCh38.bigBed |
3.1 Mb |
(ftp)(http) |
BIGBED |
GSM2308554_ENCFF209PUB_fold_change_over_control_hg19.bigWig |
275.2 Mb |
(ftp)(http) |
BIGWIG |
GSM2308554_ENCFF236QNS_signal_p-value_GRCh38.bigWig |
644.6 Mb |
(ftp)(http) |
BIGWIG |
GSM2308554_ENCFF396QLJ_peaks_hg19.bed.gz |
1.3 Mb |
(ftp)(http) |
BED |
GSM2308554_ENCFF445WJB_peaks_GRCh38.bed.gz |
1.3 Mb |
(ftp)(http) |
BED |
GSM2308554_ENCFF644BIA_fold_change_over_control_GRCh38.bigWig |
283.2 Mb |
(ftp)(http) |
BIGWIG |
GSM2308554_ENCFF798WAK_signal_p-value_hg19.bigWig |
589.8 Mb |
(ftp)(http) |
BIGWIG |
GSM2308554_ENCFF970LDX_peaks_hg19.bigBed |
3.1 Mb |
(ftp)(http) |
BIGBED |
GSM2308554_ENCLB563BJY_README.txt.gz |
1.8 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |