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Sample GSM2308554 Query DataSets for GSM2308554
Status Public on Oct 14, 2016
Title ChIP-seq from OCI-LY1 (ENCLB563BJY)
Sample type SRA
Source name Homo sapiens OCI-LY1 immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: OCI-LY1
biomaterial_type: immortalized cell line
description: established from the bone marrow of a 44-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL; diffuse large cell), stage 4B at relapse in 1983
biosample encode accession: ENCBS945KYE (SAMN05733874)
age: 44 year
dev stage: adult
Sex: male
health state: B cell lymphoma
lab: Bradley Bernstein, Broad
link: ENCBS945KYE at ENCODE;
link: Derived from ENCODE donor ENCDO350AAA;
link: ENCODE dbxrefs Cellosaurus CVCL_1879;
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
biological replicate number: 1
technical replicate number: 1
experiment encode accession: ENCSR597UDW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR569IIN
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB563BJY
size range: 200-600
nucleic acid starting quantity: 9.675
nucleic acid starting quantity units: ng
Data processing See GSM*_README.txt supplementary file linked below
Submission date Sep 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE86726 ChIP-seq from OCI-LY1 (ENCSR597UDW)
BioSample SAMN05733874
SRA SRX2156979

Supplementary file Size Download File type/resource
GSM2308554_ENCFF208IAK_peaks_GRCh38.bigBed 3.1 Mb (ftp)(http) BIGBED
GSM2308554_ENCFF209PUB_fold_change_over_control_hg19.bigWig 275.2 Mb (ftp)(http) BIGWIG
GSM2308554_ENCFF236QNS_signal_p-value_GRCh38.bigWig 644.6 Mb (ftp)(http) BIGWIG
GSM2308554_ENCFF396QLJ_peaks_hg19.bed.gz 1.3 Mb (ftp)(http) BED
GSM2308554_ENCFF445WJB_peaks_GRCh38.bed.gz 1.3 Mb (ftp)(http) BED
GSM2308554_ENCFF644BIA_fold_change_over_control_GRCh38.bigWig 283.2 Mb (ftp)(http) BIGWIG
GSM2308554_ENCFF798WAK_signal_p-value_hg19.bigWig 589.8 Mb (ftp)(http) BIGWIG
GSM2308554_ENCFF970LDX_peaks_hg19.bigBed 3.1 Mb (ftp)(http) BIGBED
GSM2308554_ENCLB563BJY_README.txt.gz 1.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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