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Sample GSM2308504 Query DataSets for GSM2308504
Status Public on Oct 14, 2016
Title ChIP-seq from Karpas-422 (ENCLB960FNO)
Sample type SRA
 
Source name Homo sapiens Karpas-422 immortalized cell line
Organism Homo sapiens
Characteristics antibody: Control
line: Karpas-422
biomaterial_type: immortalized cell line
description: Karpas422- Human B cell non-Hodgkin lymphoma
biosample encode accession: ENCBS850UIV (SAMN05733871)
age: 73 year
dev stage: adult
Sex: female
health state: human B cell non-Hodgkin's lymphoma
lab: Bradley Bernstein, Broad
link: ENCBS850UIV at ENCODE; https://www.encodeproject.org/ENCBS850UIV/
link: Derived from ENCODE donor ENCDO354AAA; https://www.encodeproject.org/ENCDO354AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_1325; http://web.expasy.org/cellosaurus/CVCL_1325
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR367UDO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR367UDO
assay title: ChIP-seq
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB960FNO
size range: 200-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Sep 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE86703 ChIP-seq from Karpas-422 (ENCSR367UDO)
Relations
BioSample SAMN05733871
SRA SRX2156917

Supplementary file Size Download File type/resource
GSM2308504_ENCLB960FNO_README.txt.gz 242 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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