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Sample GSM2308462 Query DataSets for GSM2308462
Status Public on Oct 14, 2016
Title ChIP-seq from embryonic facial prominence (ENCLB090LLC)
Sample type SRA
 
Source name Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (10.5 days)
Organism Mus musculus
Characteristics antibody: H3K27ac
tissue_type: embryonic facial prominence
biomaterial_type: tissue
description: Craniofacial prominence from 51 embryonic 10.5 day mice
biosample encode accession: ENCBS199YOQ (SAMN05733890)
age: 10.5 day
dev stage: embryonic
donor_id: ENCDO956IXV
Sex: pooled male and female
health state: healthy
lab: Len Pennacchio, LBNL
link: ENCBS199YOQ at ENCODE; https://www.encodeproject.org/ENCBS199YOQ/
link: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/18580e80-0907-4258-a412-46bcc37bd040/@@download/attachment/Ren%20Lab%20ENCODE%20Chromatin%20Immunoprecipitation%20Protocol%20MicroChIP.pdf
general protocol: https://www.encodeproject.org/documents/1fcaab50-6ca0-4778-88cb-5f6b85170d21/@@download/attachment/Ren%20Lab%20ENCODE%20Tissue%20Fixation%20and%20Sonication%20Protocol%20MicroChIP.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 4000
 
Description https://www.encodeproject.org/experiments/ENCSR151APL/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 10.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR151APL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR682UEM
encode release date: 2016-07-19
lab: Bing Ren, UCSD
library encode accession: ENCLB090LLC
size range: 300-500
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Sep 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL21103
Series (1)
GSE86682 ChIP-seq from embryonic facial prominence (ENCSR151APL)
Relations
BioSample SAMN05733890
SRA SRX2156876
Named Annotation GSM2308462_ENCFF511XET_signal_p-value_mm10.bigWig
Named Annotation GSM2308462_ENCFF420CUW_peaks_mm10.bed.gz
Named Annotation GSM2308462_ENCFF323PQS_fold_change_over_control_mm10.bigWig

Supplementary file Size Download File type/resource
GSM2308462_ENCFF323PQS_fold_change_over_control_mm10.bigWig 698.7 Mb (ftp)(http) BIGWIG
GSM2308462_ENCFF325AFZ_peaks_mm10.bigBed 4.7 Mb (ftp)(http) BIGBED
GSM2308462_ENCFF420CUW_peaks_mm10.bed.gz 2.2 Mb (ftp)(http) BED
GSM2308462_ENCFF511XET_signal_p-value_mm10.bigWig 644.9 Mb (ftp)(http) BIGWIG
GSM2308462_ENCLB090LLC_README.txt.gz 1.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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