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GEO accession:
Sample GSM2308460
Query DataSets for GSM2308460
Status
Public on Oct 14, 2016
Title
ChIP-seq from ES-E14 (ENCLB112GPU)
Sample type
SRA
Source name
Mus musculus strain 129/Ola ES-E14 stem cell male
Organism
Mus musculus
Characteristics
antibody: Control
cell_type: ES-E14
biomaterial_type: stem cell
description: mouse embryonic stem cell line E14
biosample encode accession: ENCBS054SMP (SAMN05733888)
age: unknown
dev stage: unknown
donor_id: ENCDO015AAA
Sex: male
lab: Bing Ren, UCSD
link: ENCBS054SMP at ENCODE;
https://www.encodeproject.org/ENCBS054SMP/
link: Derived from ENCODE donor ENCDO015AAA;
https://www.encodeproject.org/ENCDO015AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_C320;
http://web.expasy.org/cellosaurus/CVCL_C320
link: ENCODE dbxrefs ES-E14;
http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=ES-E14
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/52452d9f-2a60-47c5-8707-e27665be2d06/@@download/attachment/Ren_Chip_Protocol_v090113.pdf
general protocol:
https://www.encodeproject.org/documents/bcbd02f1-c8e7-47db-8fa4-86cdde87f0e2/@@download/attachment/Ren_ChIP_Library_Preparation_v090113.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2000
Description
https://www.encodeproject.org/experiments/ENCSR095IPH/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on E0 mouse ES-E14
experiment encode accession: ENCSR095IPH
assay title: ChIP-seq
encode release date: 2014-10-23
lab: Bing Ren, UCSD
library encode accession: ENCLB112GPU
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Sep 09, 2016
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL13112
Series (1)
GSE86681
ChIP-seq from ES-E14 (ENCSR095IPH)
Relations
BioSample
SAMN05733888
SRA
SRX2156885
Supplementary file
Size
Download
File type/resource
GSM2308460_ENCLB112GPU_README.txt.gz
267 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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