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Sample GSM2308447

Query DataSets for GSM2308447

Status

Public on Oct 14, 2016

Title

ChIP-seq from fibroblast of arm (ENCLB919DQK)

Sample type

SRA

Source name

Homo sapiens fibroblast of arm primary cell male adult (53 years)

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
cell_type: fibroblast of arm
biomaterial_type: primary cell
description: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).
biosample encode accession: ENCBS372AAA (SAMN04284358)
age: 53 year
donor_id: ENCDO336AAA
dev stage: adult
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS372AAA at ENCODE; https://www.encodeproject.org/ENCBS372AAA/
link: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183
link: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2000

Description

https://www.encodeproject.org/experiments/ENCSR007YOT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR007YOT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB919DQK
size range: 200-600
nucleic acid starting quantity: 26
nucleic acid starting quantity units: ng

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Sep 09, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (1)

GSE86676

ChIP-seq from fibroblast of arm (ENCSR007YOT)

Relations

BioSample

SAMN04284358

SRA

SRX2156863

Supplementary file	Size	Download	File type/resource
GSM2308447_ENCFF075JEB_peaks_hg19.bed.gz	1.7 Mb	(ftp)(http)	BED
GSM2308447_ENCFF186IMA_peaks_GRCh38.bigBed	4.7 Mb	(ftp)(http)	BIGBED
GSM2308447_ENCFF290MDG_signal_p-value_GRCh38.bigWig	1.5 Gb	(ftp)(http)	BIGWIG
GSM2308447_ENCFF391QGB_peaks_hg19.bigBed	4.7 Mb	(ftp)(http)	BIGBED
GSM2308447_ENCFF576XLQ_fold_change_over_control_hg19.bigWig	1.2 Gb	(ftp)(http)	BIGWIG
GSM2308447_ENCFF718BZR_signal_p-value_hg19.bigWig	1.5 Gb	(ftp)(http)	BIGWIG
GSM2308447_ENCFF829QXQ_fold_change_over_control_GRCh38.bigWig	1.2 Gb	(ftp)(http)	BIGWIG
GSM2308447_ENCFF984FKE_peaks_GRCh38.bed.gz	1.7 Mb	(ftp)(http)	BED
GSM2308447_ENCLB919DQK_README.txt.gz	1.7 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record