GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2308447 Query DataSets for GSM2308447
Status Public on Oct 14, 2016
Title ChIP-seq from fibroblast of arm (ENCLB919DQK)
Sample type SRA
Source name Homo sapiens fibroblast of arm primary cell male adult (53 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
cell_type: fibroblast of arm
biomaterial_type: primary cell
description: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).
biosample encode accession: ENCBS372AAA (SAMN04284358)
age: 53 year
donor_id: ENCDO336AAA
dev stage: adult
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS372AAA at ENCODE;
link: Derived from ENCODE donor ENCDO336AAA;
link: ENCODE dbxrefs Cellosaurus CVCL_F183;
link: Coriell sample source;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
biological replicate number: 2
technical replicate number: 1
experiment encode accession: ENCSR007YOT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB919DQK
size range: 200-600
nucleic acid starting quantity: 26
nucleic acid starting quantity units: ng
Data processing See GSM*_README.txt supplementary file linked below
Submission date Sep 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE86676 ChIP-seq from fibroblast of arm (ENCSR007YOT)
BioSample SAMN04284358
SRA SRX2156863

Supplementary file Size Download File type/resource
GSM2308447_ENCFF075JEB_peaks_hg19.bed.gz 1.7 Mb (ftp)(http) BED
GSM2308447_ENCFF186IMA_peaks_GRCh38.bigBed 4.7 Mb (ftp)(http) BIGBED
GSM2308447_ENCFF290MDG_signal_p-value_GRCh38.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM2308447_ENCFF391QGB_peaks_hg19.bigBed 4.7 Mb (ftp)(http) BIGBED
GSM2308447_ENCFF576XLQ_fold_change_over_control_hg19.bigWig 1.2 Gb (ftp)(http) BIGWIG
GSM2308447_ENCFF718BZR_signal_p-value_hg19.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM2308447_ENCFF829QXQ_fold_change_over_control_GRCh38.bigWig 1.2 Gb (ftp)(http) BIGWIG
GSM2308447_ENCFF984FKE_peaks_GRCh38.bed.gz 1.7 Mb (ftp)(http) BED
GSM2308447_ENCLB919DQK_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap