NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2192459 Query DataSets for GSM2192459
Status Public on Jun 22, 2016
Title ChIP-seq from stomach (ENCLB599WRG)
Sample type SRA
 
Source name Mus musculus strain B6NCrl stomach tissue mixed sex embryo (15.5 days)
Organism Mus musculus
Characteristics antibody: H3K27ac
tissue_type: stomach
biomaterial_type: tissue
description: Stomach from 62 embryonic 15.5 day mice
biosample encode accession: ENCBS355TAQ (SAMN04284060)
age: 15.5 day
donor_id: ENCDO956IXV
dev stage: embryonic
Sex: pooled male and female
health state: healthy
lab: Len Pennacchio, LBNL
link: ENCBS355TAQ at ENCODE; https://www.encodeproject.org/ENCBS355TAQ/
link: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/
link: excision protocol; https://www.encodeproject.org/documents/631aa21c-8e48-467e-8cac-d40c875b3913/@@download/attachment/StandardTissueExcisionProtocol_02132017.pdf
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/89795b31-e65a-42ca-9d7b-d75196f6f4b3/@@download/attachment/Ren%20Lab%20ENCODE%20Chromatin%20Immunoprecipitation%20Protocol_V2.pdf
general protocol: https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf
excision protocol: https://www.encodeproject.org/documents/631aa21c-8e48-467e-8cac-d40c875b3913/@@download/attachment/StandardTissueExcisionProtocol_02132017.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR929SEW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 15.5 day mouse stomach
experiment encode accession: ENCSR929SEW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR240XQT
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB599WRG
size range: 300-500
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jun 07, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (1)
GSE83026 ChIP-seq from stomach (ENCSR929SEW)
Relations
BioSample SAMN04284060
SRA SRX1834389
Named Annotation GSM2192459_ENCFF134JDQ_peaks_mm10.bed.gz
Named Annotation GSM2192459_ENCFF150ZGQ_fold_change_over_control_mm10.bigWig
Named Annotation GSM2192459_ENCFF466PFJ_signal_p-value_mm10.bigWig

Supplementary file Size Download File type/resource
GSM2192459_ENCFF134JDQ_peaks_mm10.bed.gz 1.4 Mb (ftp)(http) BED
GSM2192459_ENCFF150ZGQ_fold_change_over_control_mm10.bigWig 822.4 Mb (ftp)(http) BIGWIG
GSM2192459_ENCFF338SLG_peaks_mm10.bigBed 3.3 Mb (ftp)(http) BIGBED
GSM2192459_ENCFF466PFJ_signal_p-value_mm10.bigWig 817.4 Mb (ftp)(http) BIGWIG
GSM2192459_ENCLB599WRG_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap