GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM2192069
Query DataSets for GSM2192069
Status
Public on Jun 22, 2016
Title
ChIP-seq from intestine (ENCLB212FUN)
Sample type
SRA
Source name
Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex postnatal (0 days)
Organism
Mus musculus
Characteristics
antibody: H3K27ac
tissue_type: intestine
biomaterial_type: tissue
description: Intestine from 15 postnatal 0 day mice
biosample encode accession: ENCBS044AAA (SAMN05202031)
age: 0 day
donor_id: ENCDO469XMJ
dev stage: postnatal
Sex: pooled male and female
health state: healthy
lab: Len Pennacchio, LBNL
link: ENCBS044AAA at ENCODE;
https://www.encodeproject.org/ENCBS044AAA/
link: Derived from ENCODE donor ENCDO469XMJ;
https://www.encodeproject.org/ENCDO469XMJ/
link: excision protocol;
https://www.encodeproject.org/documents/631aa21c-8e48-467e-8cac-d40c875b3913/@@download/attachment/StandardTissueExcisionProtocol_02132017.pdf
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf
general protocol:
https://www.encodeproject.org/documents/3125496b-c833-4414-bf5f-84dd633eb30d/@@download/attachment/Ren_Tissue_Fixation_and_Sonication_v060614.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2500
Description
https://www.encodeproject.org/experiments/ENCSR642VYW/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27ac ChIP-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR642VYW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR898PML
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB212FUN
size range: 300-500
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Jun 07, 2016
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL17021
Series (1)
GSE82846
ChIP-seq from intestine (ENCSR642VYW)
Relations
BioSample
SAMN05202031
SRA
SRX1833937
Named Annotation
GSM2192069_ENCFF349IDR_signal_p-value_mm10.bigWig
Named Annotation
GSM2192069_ENCFF660XDP_peaks_mm10.bed.gz
Named Annotation
GSM2192069_ENCFF635FRS_fold_change_over_control_mm10.bigWig
Supplementary file
Size
Download
File type/resource
GSM2192069_ENCFF349IDR_signal_p-value_mm10.bigWig
354.3 Mb
(ftp)
(http)
BIGWIG
GSM2192069_ENCFF624JSC_peaks_mm10.bigBed
3.9 Mb
(ftp)
(http)
BIGBED
GSM2192069_ENCFF635FRS_fold_change_over_control_mm10.bigWig
254.6 Mb
(ftp)
(http)
BIGWIG
GSM2192069_ENCFF660XDP_peaks_mm10.bed.gz
1.8 Mb
(ftp)
(http)
BED
GSM2192069_ENCLB212FUN_README.txt.gz
1.1 Kb
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
