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Sample GSM2191364 Query DataSets for GSM2191364
Status Public on Jun 22, 2016
Title ChIP-seq from stomach (ENCLB986MPX)
Sample type SRA
 
Source name Mus musculus strain B6NCrl stomach tissue mixed sex embryo (15.5 days)
Organism Mus musculus
Characteristics antibody: Control
tissue_type: stomach
biomaterial_type: tissue
description: Stomach from 78 embryonic 15.5 day mice
biosample encode accession: ENCBS915SZN (SAMN04284180)
age: 15.5 day
donor_id: ENCDO956IXV
dev stage: embryonic
Sex: pooled male and female
health state: healthy
lab: Len Pennacchio, LBNL
link: ENCBS915SZN at ENCODE; https://www.encodeproject.org/ENCBS915SZN/
link: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/
link: excision protocol; https://www.encodeproject.org/documents/631aa21c-8e48-467e-8cac-d40c875b3913/@@download/attachment/StandardTissueExcisionProtocol_02132017.pdf
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/89795b31-e65a-42ca-9d7b-d75196f6f4b3/@@download/attachment/Ren%20Lab%20ENCODE%20Chromatin%20Immunoprecipitation%20Protocol_V2.pdf
general protocol: https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf
excision protocol: https://www.encodeproject.org/documents/631aa21c-8e48-467e-8cac-d40c875b3913/@@download/attachment/StandardTissueExcisionProtocol_02132017.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR240XQT/
***************
biological replicate number: 1
technical replicate number: 1,3,2
description: Control ChIP-seq on embryonic 15.5 day mouse stomach
experiment encode accession: ENCSR240XQT
assay title: ChIP-seq
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB986MPX
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jun 07, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (1)
GSE82524 ChIP-seq from stomach (ENCSR240XQT)
Relations
BioSample SAMN04284180
SRA SRX1833137

Supplementary file Size Download File type/resource
GSM2191364_ENCLB986MPX_README.txt.gz 263 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data not applicable for this record

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