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Sample GSM2175 Query DataSets for GSM2175
Status Public on Jun 27, 2002
Title Polio Polysomes 2 hours
Sample type RNA
 
Channel 1
Source name Mock
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Polio
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Infection
Subcategory: Polio virus
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators.
Scanning Software: unknown
Software version: unknown
Lot batch = nci430
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (1)
GSE62 mRNAs translated at eIF4F

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN TOP BOT LEFT RIGHT UNF_VALUE
1 564 135 737 147 590 590 147 737 0 .123 0 0 .918 .918 1.089 1.089 23 32 39 48 .123
2 558 179 796 206 590 590 206 796 0 .203 0 0 .869 .869 1.151 1.151 23 32 47 56 .203
3 565 145 774 133 641 641 133 774 0 -.125 0 0 1.09 1.09 .917 .917 23 32 56 65 -.125
4 562 148 779 133 646 646 133 779 0 -.154 0 0 1.113 1.113 .899 .899 23 32 65 74 -.154
5 578 165 820 167 653 653 167 820 0 .017 0 0 .988 .988 1.012 1.012 23 32 73 82 .017
6 596 153 836 196 640 640 196 836 0 .357 0 0 .781 .781 1.281 1.281 23 32 82 91 .357
7 578 165 824 170 654 654 170 824 0 .043 0 0 .971 .971 1.03 1.03 23 32 91 100 .043
8 581 150 816 176 640 640 176 816 0 .231 0 0 .852 .852 1.173 1.173 23 32 100 109 .231
9 552 116 734 119 615 615 119 734 0 .037 0 0 .975 .975 1.026 1.026 23 32 108 117 .037
10 630 1245 2928 2259 669 669 2259 2928 0 .86 0 0 .551 .551 1.814 1.814 23 32 117 126 .86
11 618 232 1090 397 693 693 397 1090 0 .775 0 0 .584 .584 1.711 1.711 23 32 126 135 .775
12 592 137 776 117 659 659 117 776 0 -.228 0 0 1.171 1.171 .854 .854 23 32 135 144 -.228
13 590 479 927 262 665 665 262 927 0 -.87 0 0 1.828 1.828 .547 .547 23 32 143 152 -.87
14 603 1221 1688 975 713 713 975 1688 0 -.325 0 0 1.252 1.252 .799 .799 23 32 152 161 -.325
15 642 770 2470 1717 753 753 1717 2470 0 1.157 0 0 .448 .448 2.23 2.23 23 32 161 170 1.157
16 596 126 853 125 728 728 125 853 0 -.011 0 0 1.008 1.008 .992 .992 23 32 170 179 -.011
17 571 121 818 115 703 703 115 818 0 -.073 0 0 1.052 1.052 .95 .95 23 32 178 187 -.073
18 584 115 787 115 672 672 115 787 0 0 0 0 1 1 1 1 23 32 187 196 0
19 590 112 791 118 673 673 118 791 0 .075 0 0 .949 .949 1.054 1.054 23 32 196 205 .075
20 578 117 808 146 662 662 146 808 0 .319 0 0 .801 .801 1.248 1.248 23 32 205 214 .319

Total number of rows: 9984

Table truncated, full table size 916 Kbytes.




Supplementary data files not provided
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