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Sample GSM2141 Query DataSets for GSM2141
Status Public on Jun 27, 2002
Title SNB-75_CL12005_RENAL
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name SNB-75_CL12005_RENAL
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2720
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 875 872 30 679 39 658 640 576 35 611 .034 0 .222 .833 3 0 .769 .857 1.3 1.167 .033 1213 52 37 45 45 53 .222
2 876 872 66 675 27 665 648 583 25 608 .01 0 -1.401 .429 1 1 2.444 2.64 .409 .379 .011 1085 52 36 44 53 61 -1.401
3 876 872 651 3 663 648 583 3 586 .043 0 1.583 0 0 0 .054 937 52 36 44 62 70
4 877 872 39 657 9 655 648 583 8 591 .043 0 -2.285 .909 0 0 4.333 4.875 .231 .205 .039 951 52 36 44 71 79 -2.285
5 874 872 30 645 652 648 583 581 .099 0 .546 1 0 .08 945 52 36 44 79 87
6 871 864 13 693 45 654 648 583 41 624 .105 0 1.657 1.077 0 0 .289 .317 3.462 3.154 .106 945 52 36 44 88 96 1.657
7 873 864 22 652 4 658 648 583 4 587 .204 0 -2.459 .6 0 0 5.5 5.5 .182 .182 .205 945 52 36 44 97 105 -2.459
8 872 864 29 628 661 648 583 565 .112 0 .444 0 0 .128 951 52 36 44 106 114
9 876 872 655 662 656 590 590 .046 0 1 0 0 0 .047 945 52 36 44 114 122
10 879 872 324 1184 528 663 656 590 476 1066 .864 0 .555 1.429 36 50 .614 .681 1.63 1.469 1.247 945 52 36 44 123 131 .555
11 875 872 166 788 132 661 656 590 119 709 .497 0 -.48 .727 5 7 1.258 1.395 .795 .717 .418 947 52 36 44 132 140 -.48
12 877 872 49 682 26 663 656 590 24 614 .229 0 -1.03 .65 0 0 1.885 2.042 .531 .49 .183 943 52 36 44 141 149 -1.03
13 883 880 8 657 1 664 656 590 1 591 .123 0 -3 1.1 0 0 8 8 .125 .125 .103 933 52 36 44 149 157 -3
14 888 880 26 711 55 664 656 590 50 640 .135 0 .943 1 0 0 .473 .52 2.115 1.923 .131 929 52 36 44 158 166 .943
15 888 880 568 2033 1369 667 664 598 1233 1831 .658 0 1.118 1.2 15 15 .415 .461 2.41 2.171 2.178 931 52 36 44 167 175 1.118
16 887 880 20 670 6 667 664 598 5 603 .047 0 -2 .667 0 0 3.333 4 .3 .25 .042 931 52 36 44 176 184 -2
17 890 888 666 2 670 664 598 2 600 .09 0 .571 0 1 0 .084 925 52 36 44 184 192
18 892 888 23 671 684 680 612 604 .093 0 1.333 0 0 .096 917 52 36 44 193 201
19 891 888 45 695 7 698 688 619 7 626 .059 0 -2.685 .556 0 0 6.429 6.429 .156 .156 .055 931 52 36 44 202 210 -2.685
20 901 896 49 693 717 704 634 624 .19 0 .292 0 0 .172 925 52 36 44 210 218

Total number of rows: 9984

Table truncated, full table size 1208 Kbytes.




Supplementary data files not provided
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