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Sample GSM213443 Query DataSets for GSM213443
Status Public on Jul 25, 2008
Title Barley seeds with P. aeruginosa PA5021 mutant for 12hr
Sample type RNA
 
Source name Barley seeds with P. aeruginosa PA5021 mutant for 12hr
Organism Hordeum vulgare
Characteristics barley seeds RNA was extracted after 12hr infection of P. aeruginosa PA5021 mutant at 25C
Extracted molecule total RNA
Extraction protocol Total RNA was extracted by SDS-phenol method, and then purified with a Qiagen RNeasy Mini Kit.
Label Biotin
Label protocol Standard protocol, available from the following website,
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
 
Hybridization protocol Standard protocol, available from the following website,
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Scan protocol Standard protocol, available from the following website,
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Description barley seeds RNA was extracted after 12hr infection of P. aeruginosa PA5021 mutant at 25C
Data processing MAS 5.0 Expression Analysis Default Setting
 
Submission date Jul 26, 2007
Last update date Aug 14, 2011
Contact name Akihiro Ueda
E-mail(s) akihiro.ueda@chemail.tamu.edu
Phone 979-845-1744
Fax 979-845-6446
Organization name Texas A&M University
Department Chemical Engineering
Street address 3122 TAMU
City College Station
State/province TX
ZIP/Postal code 77843-3122
Country USA
 
Platform ID GPL1340
Series (1)
GSE8618 P. aeruginosa virulent factor to barley

Data table header descriptions
ID_REF
Barley3-PA5021 Stat Pairs Number of perfect match probes for the probeset
Barley3-PA5021 Stat Pairs Used Number of the mismatch probes for the probeset
VALUE Signal intensity accepted from the probeset
ABS_CALL Probeset signal: absent or present
DETECTION P-VALUE Probeset signal: p-value (shows the coherency of the results)

Data table
ID_REF Barley3-PA5021 Stat Pairs Barley3-PA5021 Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 311.2 P 0.004998
AFFX-BioB-M_at 20 20 180 P 0.004998
AFFX-BioB-3_at 20 20 193.1 P 0.001796
AFFX-BioC-5_at 20 20 213.5 P 0.000754
AFFX-BioC-3_at 20 20 214.7 P 0.00039
AFFX-BioDn-5_at 20 20 1412.7 P 0.000044
AFFX-BioDn-3_at 20 20 3090.4 P 0.000127
AFFX-CreX-5_at 20 20 8808.3 P 0.000044
AFFX-CreX-3_at 20 20 14630.5 P 0.000052
AFFX-DapX-5_at 20 20 507.4 P 0.00006
AFFX-DapX-M_at 20 20 1061.8 P 0.000446
AFFX-DapX-3_at 20 20 1795.2 P 0.000044
AFFX-LysX-5_at 20 20 87 P 0.00141
AFFX-LysX-M_at 20 20 225.4 P 0.023929
AFFX-LysX-3_at 20 20 312.6 P 0.000081
AFFX-PheX-5_at 20 20 158.4 P 0.000297
AFFX-PheX-M_at 20 20 185.4 P 0.002023
AFFX-PheX-3_at 20 20 283.7 P 0.00007
AFFX-ThrX-5_at 20 20 168.2 P 0.002023
AFFX-ThrX-M_at 20 20 267.7 P 0.000127

Total number of rows: 22840

Table truncated, full table size 836 Kbytes.




Supplementary file Size Download File type/resource
GSM213443.CEL.gz 2.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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