NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM213436 Query DataSets for GSM213436
Status Public on Jul 25, 2008
Title Barley seeds with P. aeruginosa PAO1 for 12hr
Sample type RNA
 
Source name Barley seeds with P. aeruginosa PAO1 for 12hr
Organism Hordeum vulgare
Characteristics barley seeds RNA was extracted after 12hr infection of P. aeruginosa PAO1 at 25C
Extracted molecule total RNA
Extraction protocol Total RNA was extracted by SDS-phenol method, and then purified with a Qiagen RNeasy Mini Kit.
Label biotin
Label protocol Standard protocol, available from the following website,
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
 
Hybridization protocol Standard protocol, available from the following website,
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Scan protocol Standard protocol, available from the following website,
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Description barley seeds RNA was extracted after 12hr infection of P. aeruginosa PAO1 at 25C
Data processing MAS 5.0 Expression Analysis Default Setting
 
Submission date Jul 26, 2007
Last update date Aug 14, 2011
Contact name Akihiro Ueda
E-mail(s) akihiro.ueda@chemail.tamu.edu
Phone 979-845-1744
Fax 979-845-6446
Organization name Texas A&M University
Department Chemical Engineering
Street address 3122 TAMU
City College Station
State/province TX
ZIP/Postal code 77843-3122
Country USA
 
Platform ID GPL1340
Series (1)
GSE8618 P. aeruginosa virulent factor to barley

Data table header descriptions
ID_REF
Barley2-PAO1 Stat Pairs Number of perfect match probes for the probeset
Barley2-PAO1 Stat Pairs Used Number of the mismatch probes for the probeset
VALUE Signal intensity accepted from the probeset
ABS_CALL Probeset signal: absent or present
DETECTION P-VALUE Probeset signal: p-value (shows the coherency of the results)

Data table
ID_REF Barley2-PAO1 Stat Pairs Barley2-PAO1 Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 286.4 P 0.006187
AFFX-BioB-M_at 20 20 202.3 P 0.005565
AFFX-BioB-3_at 20 20 196.9 P 0.000581
AFFX-BioC-5_at 20 20 226 P 0.002867
AFFX-BioC-3_at 20 20 131.4 P 0.000754
AFFX-BioDn-5_at 20 20 1220.9 P 0.000044
AFFX-BioDn-3_at 20 20 3010.5 P 0.000169
AFFX-CreX-5_at 20 20 8904.6 P 0.000044
AFFX-CreX-3_at 20 20 11541.6 P 0.000044
AFFX-DapX-5_at 20 20 694.8 P 0.00007
AFFX-DapX-M_at 20 20 1283.6 P 0.000225
AFFX-DapX-3_at 20 20 1735.3 P 0.000044
AFFX-LysX-5_at 20 20 87 P 0.000081
AFFX-LysX-M_at 20 20 309.5 P 0.010317
AFFX-LysX-3_at 20 20 335.4 P 0.000258
AFFX-PheX-5_at 20 20 157.1 P 0.000297
AFFX-PheX-M_at 20 20 188.9 P 0.001102
AFFX-PheX-3_at 20 20 363.1 P 0.00007
AFFX-ThrX-5_at 20 20 151.1 P 0.004017
AFFX-ThrX-M_at 20 20 289.1 P 0.000195

Total number of rows: 22840

Table truncated, full table size 836 Kbytes.




Supplementary file Size Download File type/resource
GSM213436.CEL.gz 2.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap