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Sample GSM2132333 Query DataSets for GSM2132333
Status Public on Jun 22, 2017
Title X3523_DLPFC_C_SL6643
Sample type SRA
 
Source name DLPFC_Control
Organism Homo sapiens
Characteristics tissue: brain
brain region: DLPFC
age at death: 40
clinical diagnosis: Control
gender: M
ethnicity: Caucasian
post-mortem interval: 36.5
brain ph: 7.07
Extracted molecule total RNA
Extraction protocol Homogenates of post-mortem brain tissues were made using the MPBio FastPrep instrument, while RNAs were extracted using the Norgen Animal RNA isolation kit
RNA-seq was performed as previously described (Gertz et al. 2012)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description SL6643
Data processing RNA-seq paired-end FASTQ files were aligned to hg19 using Tophat and Cufflinks
Read counts for each transcript were compiled across all post-mortem tissues samples
Genome_build: hg19
Supplementary_files_format_and_content: Raw read counts for all genes across all post-mortem human brain tissues (using GENCODE v9 for transcript/gene models)
 
Submission date Apr 25, 2016
Last update date May 15, 2019
Contact name Kevin Bowling
Organization name HudsonAlpha Institute
Street address 601 Genome Way
City Huntsville
State/province AL
ZIP/Postal code 35806
Country USA
 
Platform ID GPL11154
Series (1)
GSE80655 RNA-sequencing of human post-mortem brain tissues
Relations
BioSample SAMN04901056
SRA SRX1725831

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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