|
Status |
Public on Jun 22, 2017 |
Title |
X3523_DLPFC_C_SL6643 |
Sample type |
SRA |
|
|
Source name |
DLPFC_Control
|
Organism |
Homo sapiens |
Characteristics |
tissue: brain brain region: DLPFC age at death: 40 clinical diagnosis: Control gender: M ethnicity: Caucasian post-mortem interval: 36.5 brain ph: 7.07
|
Extracted molecule |
total RNA |
Extraction protocol |
Homogenates of post-mortem brain tissues were made using the MPBio FastPrep instrument, while RNAs were extracted using the Norgen Animal RNA isolation kit RNA-seq was performed as previously described (Gertz et al. 2012)
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
SL6643
|
Data processing |
RNA-seq paired-end FASTQ files were aligned to hg19 using Tophat and Cufflinks Read counts for each transcript were compiled across all post-mortem tissues samples Genome_build: hg19 Supplementary_files_format_and_content: Raw read counts for all genes across all post-mortem human brain tissues (using GENCODE v9 for transcript/gene models)
|
|
|
Submission date |
Apr 25, 2016 |
Last update date |
May 15, 2019 |
Contact name |
Kevin Bowling |
Organization name |
HudsonAlpha Institute
|
Street address |
601 Genome Way
|
City |
Huntsville |
State/province |
AL |
ZIP/Postal code |
35806 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE80655 |
RNA-sequencing of human post-mortem brain tissues |
|
Relations |
BioSample |
SAMN04901056 |
SRA |
SRX1725831 |