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Sample GSM210901 Query DataSets for GSM210901
Status Public on Jul 18, 2007
Title HeLa transfected with miR122a duplex versus control transfected HeLa, 24 hours
Sample type RNA
 
Channel 1
Source name Mock transfected HeLa, 24 hours
Organism Homo sapiens
Characteristics Mock transfected HeLa, 24 hours
Extracted molecule total RNA
Extraction protocol Qiagen RNAeasy
Label Cy3
Label protocol Customized Ambion MessageAmp II
 
Channel 2
Source name HeLa transfected with miR122a duplex, 24 hours
Organism Homo sapiens
Characteristics HeLa transfected with miR122a duplex, 24 hours
Extracted molecule total RNA
Extraction protocol Qiagen RNAeasy
Label Cy5
Label protocol Customized Ambion MessageAmp II
 
 
Hybridization protocol Hybridization to Agilent microarrays as described in Hughes et al, Nature Biotechnology (2001), 19(4):342-7.
Scan protocol Agilent LP2 laser scanner
Description Transfection of miRNA duplexes into cell lines as described in Grimson et al., Molecular Cell, 2007
Data processing Error model as described in Hughes et al and in US patent #6,351,712
 
Submission date Jul 16, 2007
Last update date Jul 18, 2007
Contact name Lee Lim
E-mail(s) lee_lim@merck.com
Phone 206-802-7323
Organization name Rosetta Inpharmatics
Street address
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platform ID GPL3991
Series (1)
GSE8501 MicroRNA targeting specificity in mammals: determinants beyond seed pairing

Data table header descriptions
ID_REF Rosetta generated unique probe identifier
VALUE LOG10 RATIO: Averaged log10 ratio of a fluor-reversed chip pair [log10(CHANNEL2/CHANNEL1), error weighted]
LOG_INTENSITY Averaged log10 intensity of a fluor-reversed chip pair
P_VALUE P value that the probe target is differentially expressed in the two tissues
INTENSITY1 CHANNEL1 intensity; averaged raw data from a fluor-reversed pair
INTENSITY2 CHANNEL2 intensity; averaged raw data from a fluor-reversed pair

Data table
ID_REF VALUE LOG_INTENSITY P_VALUE INTENSITY1 INTENSITY2
10019475365 0.37089166045188904 -0.54401886463165283 7.700695050516515e-007 0.18593999743461609 0.44044500589370728
10019481149 0.037515640258789063 -0.13873845338821411 0.43154990673065186 0.69821500778198242 0.76231503486633301
10019495284 0.045348852872848511 0.0024511152878403664 0.4411332905292511 0.95441997051239014 1.0630699396133423
10019687586 -0.013496900908648968 -1.2334604263305664 0.89051508903503418 0.060040000826120377 0.058054998517036438
10019713746 0.37287324666976929 -0.11157308518886566 3.9818171870820152e-008 0.50288498401641846 1.1913000345230103
10019799479 0.25599047541618347 -0.55351579189300537 5.2661631343653426e-005 0.20840999484062195 0.37590998411178589
10019809115 0.29912450909614563 -0.22809942066669464 9.6515066161373397e-007 0.41878500580787659 0.83616501092910767
10019874890 0.037633080035448074 -0.8150830864906311 0.55780643224716187 0.14889499545097351 0.16097500920295715
10019909307 0.13775010406970978 -0.81919616460800171 0.011636242270469666 0.13223499059677124 0.18196000158786774
10019911222 0.03805113211274147 -0.26401841640472412 0.49816572666168213 0.52181500196456909 0.56902003288269043
10019924807 -0.03195594996213913 -1.9272069931030273 0.93138408660888672 0.014055000618100166 0.014159999787807465
10019927856 -0.10456790030002594 0.072625324130058289 0.02609739825129509 1.3334250450134277 1.0482850074768066
10019932383 0.0008003071416169405 -0.3724951446056366 0.98810583353042603 0.42403000593185425 0.42542999982833862
10019948931 -0.0033162671606987715 -1.2004349231719971 0.96872717142105103 0.064805001020431519 0.064060002565383911
10019975533 0.074791483581066132 -1.7250516414642334 0.75791662931442261 0.017774999141693115 0.02122499980032444
10019977227 -0.1614774763584137 -0.34441682696342468 0.0029556779190897942 0.54820501804351807 0.37663501501083374
10019987588 0.0084260031580924988 -0.60997462272644043 0.86996549367904663 0.24754999577999115 0.2527499794960022
10020008603 0.025925328955054283 -0.54980134963989258 0.5750395655632019 0.27757498621940613 0.29449999332427979
10020014121 -0.07200845330953598 -0.12581193447113037 0.264178067445755 0.81373500823974609 0.69037997722625732
10020044367 0.0010198433883488178 -0.76968580484390259 0.98419779539108276 0.17541000247001648 0.17567999660968781

Total number of rows: 22736

Table truncated, full table size 2511 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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