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Sample GSM2106 Query DataSets for GSM2106
Status Public on Jun 27, 2002
Title NCI-H23_CL1001__NSCLC
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NCI-H23_CL1001__NSCLC
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2794
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1281 1264 45 519 532 520 477 476 .188 0 .353 0 0 .152 1213 52 18 26 44 52
2 1276 1264 519 7 529 512 469 7 476 .204 0 .5 0 0 0 .179 1069 52 18 26 52 60
3 1274 1264 522 10 526 512 469 9 478 .172 0 .286 0 0 0 .153 925 52 18 26 61 69
4 1267 1256 523 19 522 504 462 17 479 .166 0 .182 0 1 0 .174 931 52 18 26 70 78
5 1253 1240 22 499 514 512 469 457 .068 0 .143 0 0 .028 925 52 18 26 78 86
6 1254 1240 12 492 516 512 469 451 0 .539 0 0 925 52 18 26 87 95
7 1247 1240 42 540 28 516 512 469 26 495 0 -.692 .625 0 1 1.5 1.615 .667 .619 931 52 18 26 96 104 -.692
8 1234 1232 527 15 515 512 469 14 483 0 .346 0 0 0 931 52 18 26 105 113
9 1232 1232 490 520 512 469 449 .052 0 .5 0 0 0 .024 925 52 18 26 113 121
10 1235 1224 286 829 317 526 512 469 291 760 .806 0 .025 .917 23 42 .902 .983 1.108 1.017 .712 925 52 18 26 122 130 .025
11 1227 1216 132 572 52 532 520 477 47 524 .308 0 -1.49 .361 1 1 2.538 2.809 .394 .356 .188 931 52 18 26 131 139 -1.49
12 1234 1224 31 496 528 512 469 455 .109 0 .667 0 0 .075 931 52 18 26 140 148
13 1238 1232 506 2 522 504 462 2 464 .058 0 .385 0 0 0 .036 925 52 18 26 148 156
14 1231 1224 571 75 512 496 455 68 523 .178 0 1 0 7 0 .141 921 52 18 26 157 165
15 1239 1232 85 579 83 513 496 455 76 531 .256 0 -.161 .667 1 7 1.024 1.118 .976 .894 .189 931 52 18 26 166 174 -.161
16 1231 1216 18 508 12 508 496 455 11 466 .151 0 -.71 .333 0 0 1.5 1.636 .667 .611 .09 931 52 18 26 175 183 -.71
17 1222 1216 12 482 509 496 455 442 .141 0 .138 0 0 .09 925 52 18 26 183 191
18 1241 1208 469 510 496 455 430 .148 0 .417 0 0 0 .041 919 52 18 26 192 200
19 1236 1208 68 486 498 488 447 445 .089 0 .414 0 1 .019 931 52 18 26 201 209
20 1240 1208 31 476 501 496 455 436 .113 0 .273 1 0 .021 925 52 18 26 209 217

Total number of rows: 9984

Table truncated, full table size 1246 Kbytes.




Supplementary data files not provided
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