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Sample GSM2105 Query DataSets for GSM2105
Status Public on Jun 27, 2002
Title HOP-62_CL1026_NSCLC
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name HOP-62_CL1026_NSCLC
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2789
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1423 1376 4 592 8 652 584 435 6 441 .763 0 .585 .444 0 0 .5 .667 2 1.5 1.194 1213 52 20 28 38 46 .585
2 1406 1368 8 582 657 584 435 434 .872 0 .286 0 1 1.581 1069 52 20 28 46 54
3 1399 1360 565 662 576 429 421 .887 0 1.25 0 0 0 1.621 925 52 20 28 55 63
4 1398 1352 552 664 568 423 411 .89 0 .571 0 0 0 1.571 931 52 20 28 64 72
5 1374 1344 10 588 20 598 568 423 15 438 .513 0 .585 .647 0 0 .5 .667 2 1.5 .482 925 52 20 28 72 80 .585
6 1372 1336 564 593 568 423 420 .562 0 1 0 0 0 .439 925 52 20 28 81 89
7 1371 1336 13 574 14 587 560 417 11 428 .534 0 -.241 .6 0 0 .929 1.182 1.077 .846 .412 931 52 20 28 90 98 -.241
8 1363 1344 569 9 577 560 417 7 424 .237 0 .323 0 0 0 .157 931 52 20 28 99 107
9 1358 1344 551 574 560 417 411 .167 0 .5 0 0 0 .123 925 52 20 28 107 115
10 1361 1344 288 906 346 583 560 417 259 676 .749 0 -.153 1.319 23 46 .832 1.112 1.201 .899 .718 925 52 20 28 116 124 -.153
11 1359 1344 123 650 90 591 560 417 68 485 .559 0 -.855 .667 1 11 1.367 1.809 .732 .553 .483 931 52 20 28 125 133 -.855
12 1372 1344 89 554 599 560 417 413 .458 0 .333 0 0 .395 931 52 20 28 134 142
13 1391 1360 10 581 21 595 560 417 16 433 .409 0 .678 .88 0 3 .476 .625 2.1 1.6 .296 925 52 20 28 142 150 .678
14 1388 1360 4 575 15 583 560 417 12 429 .331 0 1.585 .5 0 0 .267 .333 3.75 3 .217 921 52 20 28 151 159 1.585
15 1397 1368 68 662 102 592 560 417 77 494 .592 0 .179 .857 0 11 .667 .883 1.5 1.132 .565 931 52 20 28 160 168 .179
16 1396 1368 23 560 591 560 417 417 .61 0 .4 0 0 0 .545 931 52 20 28 169 177
17 1375 1352 557 592 568 423 415 .721 0 .35 0 0 0 .792 925 52 20 28 177 185
18 1368 1344 8 558 591 560 417 416 .748 0 1.308 0 0 .843 919 52 20 28 186 194
19 1350 1344 34 566 6 572 560 417 5 422 .135 0 -2.766 .375 0 0 5.667 6.8 .176 .147 .09 931 52 20 28 195 203 -2.766
20 1352 1344 41 582 22 568 560 417 17 434 .169 0 -1.27 .727 0 0 1.864 2.412 .537 .415 .118 925 52 20 28 203 211 -1.27

Total number of rows: 9984

Table truncated, full table size 1232 Kbytes.




Supplementary data files not provided
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