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Sample GSM2097 Query DataSets for GSM2097
Status Public on Jun 27, 2002
Title SN12C_CL9008__RENAL
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name SN12C_CL9008__RENAL
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2778
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1598 1448 6 1135 47 1108 1088 908 39 948 .543 0 2.709 .909 0 1 .128 .153 7.833 6.541 .066 1049 52 12 20 62 70 2.709
2 1469 1456 71 1108 12 1117 1096 915 10 925 0 -2.825 .85 0 0 5.917 7.086 .169 .141 905 52 12 20 70 78 -2.825
3 1479 1464 1126 14 1146 1112 928 12 940 0 1.167 0 0 0 773 52 12 20 79 87
4 1472 1464 1178 66 1138 1112 928 55 984 0 .952 0 0 0 767 52 12 20 88 96
5 1468 1456 1147 43 1147 1104 922 36 958 0 1 0 0 0 767 52 12 20 97 105
6 1461 1440 1119 23 1137 1096 915 19 934 0 .5 0 0 0 761 52 12 20 105 113
7 1473 1448 1102 46 1077 1056 882 38 920 0 1.8 0 0 0 761 52 12 20 114 122
8 1462 1432 1018 10 1041 1008 842 8 850 0 .933 0 0 0 767 52 12 20 123 131
9 1516 1440 1058 90 997 968 808 75 883 .306 0 1.167 0 3 0 .063 767 52 12 20 132 140
10 1863 1440 89 1078 150 1024 928 775 125 900 .815 0 .493 .5 0 7 .593 .711 1.685 1.407 .184 761 52 12 20 140 148 .493
11 1848 1440 247 836 1014 920 768 -70 698 .883 0 .308 9 3 .184 761 52 12 20 149 157
12 1842 1440 26 857 1008 920 768 -53 716 .889 0 .913 1 3 .189 779 52 12 20 158 166
13 1839 1424 952 40 986 912 761 33 795 .921 0 .931 0 0 0 .186 767 52 12 20 167 175
14 1424 1416 798 921 920 768 -102 666 0 .958 0 0 0 767 52 12 20 176 184
15 1429 1424 902 939 936 782 -28 753 .04 0 .647 0 0 0 .032 761 52 12 20 184 192
16 1430 1424 1033 81 963 952 795 68 863 .006 0 1.111 0 0 0 .006 761 52 12 20 193 201
17 1426 1424 1011 43 985 968 808 36 844 0 .641 0 0 0 767 52 12 20 202 210
18 1432 1424 1023 55 985 968 808 46 854 0 .923 0 0 0 767 52 12 20 211 219
19 1429 1424 842 980 968 808 -105 703 .219 0 4.778 0 1 0 .3 765 52 12 20 219 227
20 1423 1416 702 954 952 795 -209 586 .308 0 .889 0 0 0 .372 769 52 12 20 228 236

Total number of rows: 9984

Table truncated, full table size 1211 Kbytes.




Supplementary data files not provided
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