NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2094 Query DataSets for GSM2094
Status Public on Jun 27, 2002
Title SK-MEL-5_CL10007_MELANOMA
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name SK-MEL-5_CL10007_MELANOMA
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2775
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1005 992 11 590 634 608 515 500 .438 0 1.091 0 0 .729 1213 52 17 25 56 64
2 1015 1000 578 644 616 522 489 .495 0 1.667 0 0 0 .882 1069 52 17 25 64 72
3 1024 1008 565 656 624 528 478 .496 0 .786 0 0 0 .892 937 52 17 25 73 81
4 1026 1008 104 675 59 639 616 522 50 572 .609 0 -1.057 .75 0 0 1.763 2.08 .567 .481 .566 931 52 17 25 82 90 -1.057
5 1020 1000 568 642 616 522 481 .625 0 .222 0 0 0 .643 931 52 17 25 91 99
6 1008 992 574 631 608 515 486 .677 0 1.25 0 0 0 .566 925 52 17 25 99 107
7 987 976 604 12 611 592 501 10 511 .691 0 1.077 0 0 0 .567 925 52 17 25 108 116
8 984 976 46 701 109 609 592 501 93 594 .466 0 1.016 .949 1 3 .422 .495 2.37 2.022 .786 931 52 17 25 117 125 1.016
9 975 968 6 578 597 584 494 489 .161 0 .438 0 0 .146 931 52 17 25 126 134
10 976 968 152 768 184 589 584 494 156 650 .702 0 .037 1.071 5 32 .826 .974 1.211 1.026 .705 925 52 17 25 134 142 .037
11 977 968 87 605 29 584 576 488 24 512 .321 0 -1.858 .546 0 0 3 3.625 .333 .276 .22 925 52 17 25 143 151 -1.858
12 981 968 26 563 582 576 488 477 .292 0 .471 0 0 .175 943 52 17 25 152 160
13 980 976 560 617 576 488 474 .196 0 .818 0 0 0 .391 931 52 17 25 161 169
14 979 976 42 547 676 576 488 463 .125 0 .286 0 0 .34 931 52 17 25 170 178
15 979 976 17 644 60 703 584 494 51 545 .16 0 1.585 1.222 0 3 .283 .333 3.529 3 .514 925 52 17 25 178 186 1.585
16 972 968 575 716 592 501 487 .25 0 .889 0 0 0 .973 925 52 17 25 187 195
17 970 968 558 726 592 501 472 .226 0 .5 0 0 0 .872 931 52 17 25 196 204
18 969 968 544 680 592 501 461 .199 0 .25 0 0 0 .585 931 52 17 25 205 213
19 969 968 4 532 659 592 501 450 .153 0 .375 0 0 .459 925 52 17 25 213 221
20 966 960 528 634 584 494 447 .168 0 .5 0 0 0 .494 925 52 17 25 222 230

Total number of rows: 9984

Table truncated, full table size 1219 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap