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Sample GSM2093 Query DataSets for GSM2093
Status Public on Jun 27, 2002
Title ACHN_CL9023_RENAL
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name ACHN_CL9023_RENAL
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2851
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 819 816 875 3 880 872 1341 5 1346 .113 0 .667 0 0 0 .123 1131 52 14 22 62 70
2 829 824 869 887 880 1353 1336 .141 0 1.111 0 0 0 .175 987 52 14 22 70 78
3 841 840 846 895 888 1366 1301 .31 0 1.75 0 0 0 .358 843 52 14 22 79 87
4 844 840 861 900 896 1378 1324 .147 0 .4 0 0 0 .179 849 52 14 22 88 96
5 844 840 862 902 896 1378 1326 .104 0 2.333 0 1 0 .148 843 52 14 22 96 104
6 852 848 877 902 896 1378 1349 .18 0 2.4 0 0 0 .199 843 52 14 22 105 113
7 855 848 866 903 896 1378 1332 .24 0 1 0 0 0 .286 849 52 14 22 114 122
8 860 856 873 904 888 1366 1343 .21 0 .429 0 0 0 .257 849 52 14 22 123 131
9 863 864 872 903 888 1366 1341 .207 0 1 0 0 0 .276 843 52 14 22 131 139
10 871 864 238 986 98 905 888 1366 150 1516 .617 0 -.666 .395 32 1 2.429 1.587 .412 .63 .302 843 52 14 22 140 148 -.666
11 875 872 94 888 907 896 1378 1366 .124 0 .52 1 0 .084 849 52 14 22 149 157
12 878 872 49 851 904 888 1366 1309 0 1 0 0 849 52 14 22 158 166
13 879 880 878 902 888 1366 1350 .204 0 2.5 0 0 0 .204 843 52 14 22 166 174
14 874 872 77 872 902 896 1378 1341 .118 0 .308 0 0 .099 839 52 14 22 175 183
15 876 872 6 884 903 896 1378 1360 .106 0 .909 0 0 .126 849 52 14 22 184 192
16 875 872 867 906 896 1378 1333 .278 0 1.2 0 0 0 .348 849 52 14 22 193 201
17 875 872 876 907 896 1378 1347 .247 0 .6 0 0 0 .303 843 52 14 22 201 209
18 879 872 855 905 896 1378 1315 .196 0 2 0 0 0 .252 837 52 14 22 210 218
19 886 880 86 898 2 901 896 1378 3 1381 .069 0 -4.841 .475 1 0 43 28.667 .023 .035 .047 849 52 14 22 219 227 -4.841
20 909 896 83 908 12 900 896 1378 18 1396 .288 0 -2.205 .313 0 0 6.917 4.611 .145 .217 .125 843 52 14 22 227 235 -2.205

Total number of rows: 9984

Table truncated, full table size 1247 Kbytes.




Supplementary data files not provided
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