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Sample GSM2091 Query DataSets for GSM2091
Status Public on Jun 27, 2002
Title UACC-62_CL10020_MELANOMA
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name UACC-62_CL10020_MELANOMA
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2849
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1020 992 790 6 805 784 712 6 718 .955 0 .333 0 0 0 .833 926 52 9 17 39 47
2 1038 1008 768 817 792 720 698 .955 0 .909 0 0 0 .837 757 52 8 16 47 55
3 1032 1000 784 821 792 720 712 .969 0 1.375 0 0 0 .851 617 52 8 16 56 64
4 1076 1008 773 838 800 727 702 .937 0 .333 1 0 0 .657 623 52 8 16 65 73
5 1089 1024 788 846 792 720 716 .936 0 .438 0 0 0 .68 623 52 8 16 74 82
6 1062 1016 785 824 800 727 713 .908 0 1 0 0 0 .51 617 52 8 16 82 90
7 1061 1016 797 823 800 727 724 .908 0 .546 0 0 0 .513 617 52 8 16 91 99
8 1045 1008 787 821 792 720 715 .915 0 .4 0 0 0 .519 623 52 8 16 100 108
9 1026 1016 780 805 792 720 709 .636 0 .364 0 0 0 .694 623 52 8 16 109 117
10 1024 1016 211 1036 244 798 792 720 221 941 .855 0 .067 1.222 25 34 .865 .955 1.156 1.047 .851 617 52 8 16 117 125 .067
11 1033 1024 108 842 50 797 792 720 45 765 .466 0 -1.263 .656 1 0 2.16 2.4 .463 .417 .266 617 52 8 16 126 134 -1.263
12 1036 1032 28 785 801 800 727 713 .149 0 .333 0 0 .102 635 52 8 16 135 143
13 1039 1032 773 799 792 720 702 .091 0 .917 0 0 0 .069 623 52 8 16 144 152
14 1026 1024 32 797 13 789 784 712 12 724 .293 0 -1.415 .8 0 0 2.462 2.667 .406 .375 .237 623 52 8 16 153 161 -1.415
15 1023 1024 9 852 68 791 784 712 62 774 .245 0 2.784 1.04 0 0 .132 .145 7.556 6.889 .212 617 52 8 16 161 169 2.784
16 1029 1024 775 789 784 712 704 .082 0 1.333 0 0 0 .064 617 52 8 16 170 178
17 1038 1032 770 791 784 712 700 .175 0 .571 0 0 0 .14 623 52 8 16 179 187
18 1050 1040 776 801 792 720 705 .54 0 .7 0 0 0 .598 623 52 8 16 188 196
19 1054 1040 120 816 24 802 792 720 21 741 .389 0 -2.515 .167 3 3 5 5.714 .2 .175 .188 617 52 8 16 196 204 -2.515
20 1048 1040 80 814 22 803 792 720 20 740 .497 0 -2 .415 0 0 3.636 4 .275 .25 .49 617 52 8 16 205 213 -2

Total number of rows: 9984

Table truncated, full table size 1242 Kbytes.




Supplementary data files not provided
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