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Sample GSM2090 Query DataSets for GSM2090
Status Public on Jun 27, 2002
Title SNB-19_CL12002_CNS
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name SNB-19_CL12002_CNS
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2848
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 981 984 638 668 664 962 924 .133 0 .546 0 0 0 .113 885 52 8 16 42 50
2 991 992 653 673 672 973 946 .2 0 .438 0 0 0 .157 716 52 7 15 50 58
3 1000 1000 648 675 672 973 939 .157 0 1.5 0 0 0 .134 576 52 7 15 59 67
4 1004 1000 651 677 672 973 943 .235 0 .462 0 0 0 .207 582 52 7 15 68 76
5 1015 1000 647 675 672 973 937 .192 0 .75 0 0 0 .083 582 52 7 15 77 85
6 1020 1000 653 672 664 962 946 .188 0 .857 0 0 0 .086 576 52 7 15 85 93
7 1016 1000 10 657 673 664 962 952 .212 0 .5 0 0 .089 576 52 7 15 94 102
8 1014 1000 663 673 664 962 960 .207 0 1 0 0 0 .089 582 52 7 15 103 111
9 1001 992 649 669 664 962 940 .174 0 .235 0 0 0 .127 582 52 7 15 112 120
10 993 992 174 763 99 668 664 962 143 1105 .762 0 -.283 .5 25 5 1.758 1.217 .569 .822 .373 576 52 7 15 120 128 -.283
11 986 984 94 668 4 664 664 962 6 968 .355 0 -3.97 .294 0 0 23.5 15.667 .043 .064 .18 576 52 7 15 129 137 -3.97
12 984 976 61 649 665 664 962 940 .054 0 .5 0 0 .033 594 52 7 15 138 146
13 979 976 17 661 666 664 962 957 .179 0 1 0 0 .13 582 52 7 15 147 155
14 977 968 57 669 13 663 656 950 19 969 .136 0 -1.585 .6 0 0 4.385 3 .228 .333 .101 582 52 7 15 156 164 -1.585
15 976 976 23 672 8 667 664 962 11 973 .233 0 -1.064 .5 0 0 2.875 2.091 .348 .478 .166 576 52 7 15 164 172 -1.064
16 979 976 642 664 664 962 930 .014 0 .455 0 0 0 .013 576 52 7 15 173 181
17 981 984 644 660 656 950 933 .098 0 .7 0 0 0 .077 582 52 7 15 182 190
18 991 984 33 654 663 656 950 947 .131 0 .643 1 0 .046 582 52 7 15 191 199
19 1008 992 34 683 19 671 664 962 27 989 .682 0 -.333 1 1 0 1.789 1.259 .559 .794 .315 576 52 7 15 199 207 -.333
20 1017 1000 154 749 85 676 664 962 123 1085 .925 0 -.324 .591 1 3 1.812 1.252 .552 .799 .518 576 52 7 15 208 216 -.324

Total number of rows: 9984

Table truncated, full table size 1230 Kbytes.




Supplementary data files not provided
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