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Sample GSM2072579 Query DataSets for GSM2072579
Status Public on Mar 18, 2016
Title total RNA-seq from forebrain (ENCLB472TKY)
Sample type SRA
Source name Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex postnatal (0 days)
Organism Mus musculus
Characteristics tissue_type: forebrain
biomaterial_type: tissue
description: Forebrain from 15 postnatal 0 day mice
biosample encode accession: ENCBS038AAA (SAMN04283981)
age: 0 day
donor_id: ENCDO469XMJ
dev stage: postnatal
Sex: pooled male and female
health state: healthy
lab: Len Pennacchio, LBNL
link: ENCBS038AAA at ENCODE;
link: Derived from ENCODE donor ENCDO469XMJ;
link: excision protocol;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from independent isolates of forebrain tissue. They are stranded PE101 Illumina Hi-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR723SZV
assay title: total RNA-seq
assembly: mm10
encode release date: 2014-09-03
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB472TKY
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (1)
GSE78667 total RNA-seq from forebrain (ENCSR723SZV)
SRA SRX1603639
BioSample SAMN04283981
Named Annotation GSM2072579_ENCFF512MHA_plus_strand_signal_of_unique_reads_mm10.bigWig
Named Annotation GSM2072579_ENCFF516SHM_minus_strand_signal_of_unique_reads_mm10.bigWig
Named Annotation GSM2072579_ENCFF189OVG_minus_strand_signal_of_all_reads_mm10.bigWig
Named Annotation GSM2072579_ENCFF982BUS_plus_strand_signal_of_all_reads_mm10.bigWig

Supplementary file Size Download File type/resource
GSM2072579_ENCFF189OVG_minus_strand_signal_of_all_reads_mm10.bigWig 156.0 Mb (ftp)(http) BIGWIG
GSM2072579_ENCFF512MHA_plus_strand_signal_of_unique_reads_mm10.bigWig 143.4 Mb (ftp)(http) BIGWIG
GSM2072579_ENCFF516SHM_minus_strand_signal_of_unique_reads_mm10.bigWig 143.8 Mb (ftp)(http) BIGWIG
GSM2072579_ENCFF896FWG_transcript_quantifications_mm10.tsv.gz 4.3 Mb (ftp)(http) TSV
GSM2072579_ENCFF976DIF_gene_quantifications_mm10.tsv.gz 1.9 Mb (ftp)(http) TSV
GSM2072579_ENCFF982BUS_plus_strand_signal_of_all_reads_mm10.bigWig 156.0 Mb (ftp)(http) BIGWIG
GSM2072579_ENCLB472TKY_README.txt.gz 753 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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