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Sample GSM2072543 Query DataSets for GSM2072543
Status Public on Mar 18, 2016
Title total RNA-seq from skeletal muscle myoblast (ENCLB493TSJ)
Sample type SRA
Source name Homo sapiens skeletal muscle myoblast primary cell
Organism Homo sapiens
Characteristics cell_type: skeletal muscle myoblast
biomaterial_type: primary cell
description: skeletal muscle myoblasts
biosample encode accession: ENCBS328AAA (SAMN04284352)
age: unknown
donor_id: ENCDO094AAA
dev stage: unknown
Sex: not collected
lab: John Stamatoyannopoulos, UW
link: ENCBS328AAA at ENCODE;
link: Derived from ENCODE donor ENCDO094AAA;
link: growth protocol;
link: ENCODE dbxrefs HSMM;
link: Lonza sample source;
Extracted molecule total RNA
Extraction protocol data sheet:
extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from independent growths of primary cell line HSMM that has been differentiated into myoblasts. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR444WHQ
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB493TSJ
size range: >200
spikeins used: /references/ENCSR156CIL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE78649 total RNA-seq from skeletal muscle myoblast (ENCSR444WHQ)
Reanalyzed by GSE111163
SRA SRX1603586
BioSample SAMN04284352
Named Annotation GSM2072543_ENCFF662OVY_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2072543_ENCFF330JWP_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2072543_ENCFF475THA_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2072543_ENCFF080PBN_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2072543_ENCFF027LTC_plus_strand_signal_of_all_reads_hg19.bigWig 96.4 Mb (ftp)(http) BIGWIG
GSM2072543_ENCFF080PBN_minus_strand_signal_of_all_reads_GRCh38.bigWig 100.1 Mb (ftp)(http) BIGWIG
GSM2072543_ENCFF230ZGM_minus_strand_signal_of_all_reads_hg19.bigWig 98.7 Mb (ftp)(http) BIGWIG
GSM2072543_ENCFF330JWP_plus_strand_signal_of_all_reads_GRCh38.bigWig 100.1 Mb (ftp)(http) BIGWIG
GSM2072543_ENCFF351SUL_transcript_quantifications_GRCh38.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2072543_ENCFF475THA_minus_strand_signal_of_unique_reads_GRCh38.bigWig 92.3 Mb (ftp)(http) BIGWIG
GSM2072543_ENCFF531OTQ_plus_strand_signal_of_all_reads_hg19.bigWig 55.7 Mb (ftp)(http) BIGWIG
GSM2072543_ENCFF551YKI_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2072543_ENCFF574KWX_plus_strand_signal_of_unique_reads_hg19.bigWig 53.5 Mb (ftp)(http) BIGWIG
GSM2072543_ENCFF602WDZ_minus_strand_signal_of_all_reads_hg19.bigWig 55.1 Mb (ftp)(http) BIGWIG
GSM2072543_ENCFF662OVY_plus_strand_signal_of_unique_reads_GRCh38.bigWig 90.4 Mb (ftp)(http) BIGWIG
GSM2072543_ENCFF707VPB_minus_strand_signal_of_unique_reads_hg19.bigWig 52.7 Mb (ftp)(http) BIGWIG
GSM2072543_ENCFF752XQX_plus_strand_signal_of_unique_reads_hg19.bigWig 91.2 Mb (ftp)(http) BIGWIG
GSM2072543_ENCFF803CZZ_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2072543_ENCFF865SBB_transcript_quantifications_hg19.tsv.gz 7.6 Mb (ftp)(http) TSV
GSM2072543_ENCFF891TPX_minus_strand_signal_of_unique_reads_hg19.bigWig 93.1 Mb (ftp)(http) BIGWIG
GSM2072543_ENCLB493TSJ_README.txt.gz 1.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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