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Sample GSM2072466 Query DataSets for GSM2072466
Status Public on Mar 18, 2016
Title total RNA-seq from fibroblast of dermis (ENCLB555AMQ)
Sample type SRA
Source name Homo sapiens fibroblast of dermis primary cell female adult (44 years)
Organism Homo sapiens
Characteristics cell_type: fibroblast of dermis
biomaterial_type: primary cell
description: Skin Fibroblasts (NHDF) from the breast dermal layer that were surgically resected from a 44 year old caucasian female.
biosample encode accession: ENCBS476ENC (SAMN04284388)
age: 44 year
donor_id: ENCDO120AAA
dev stage: adult
passage number: 2
Sex: female
health state: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV
lab: Thomas Gingeras, CSHL
link: ENCBS476ENC at ENCODE;
link: Derived from ENCODE donor ENCDO120AAA;
link: certificate of analysis;
link: ENCODE dbxrefs NHDF_7071701.2;
link: ENCODE dbxrefs NHDF;
link: PromoCell sample source;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from skin fibroblasts primary whole cells, NHDF isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUH
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AMQ
size range: >200
spikeins used: /references/ENCSR470JZL/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE78610 total RNA-seq from fibroblast of dermis (ENCSR000CUH)
Reanalyzed by GSE111163
SRA SRX1603516
BioSample SAMN04284388
Named Annotation GSM2072466_ENCFF232ZLN_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2072466_ENCFF077KSU_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2072466_ENCFF120SYM_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2072466_ENCFF102NVX_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2072466_ENCFF075CXE_plus_strand_signal_of_unique_reads_hg19.bigWig 321.7 Mb (ftp)(http) BIGWIG
GSM2072466_ENCFF077KSU_minus_strand_signal_of_unique_reads_GRCh38.bigWig 328.8 Mb (ftp)(http) BIGWIG
GSM2072466_ENCFF081NBY_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2072466_ENCFF102NVX_minus_strand_signal_of_all_reads_GRCh38.bigWig 349.8 Mb (ftp)(http) BIGWIG
GSM2072466_ENCFF120SYM_plus_strand_signal_of_all_reads_GRCh38.bigWig 364.6 Mb (ftp)(http) BIGWIG
GSM2072466_ENCFF232ZLN_plus_strand_signal_of_unique_reads_GRCh38.bigWig 345.2 Mb (ftp)(http) BIGWIG
GSM2072466_ENCFF278HST_plus_strand_signal_of_all_reads_hg19.bigWig 334.9 Mb (ftp)(http) BIGWIG
GSM2072466_ENCFF355AYH_plus_strand_signal_of_unique_reads_hg19.bigWig 342.8 Mb (ftp)(http) BIGWIG
GSM2072466_ENCFF410HOR_minus_strand_signal_of_all_reads_hg19.bigWig 320.1 Mb (ftp)(http) BIGWIG
GSM2072466_ENCFF599RMW_plus_strand_signal_of_all_reads_hg19.bigWig 360.0 Mb (ftp)(http) BIGWIG
GSM2072466_ENCFF628WVC_transcript_quantifications_GRCh38.tsv.gz 7.9 Mb (ftp)(http) TSV
GSM2072466_ENCFF748FWL_minus_strand_signal_of_unique_reads_hg19.bigWig 305.9 Mb (ftp)(http) BIGWIG
GSM2072466_ENCFF768XLE_transcript_quantifications_hg19.tsv.gz 7.7 Mb (ftp)(http) TSV
GSM2072466_ENCFF786STS_minus_strand_signal_of_all_reads_hg19.bigWig 345.1 Mb (ftp)(http) BIGWIG
GSM2072466_ENCFF870JUS_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2072466_ENCFF883IOU_minus_strand_signal_of_unique_reads_hg19.bigWig 326.1 Mb (ftp)(http) BIGWIG
GSM2072466_ENCLB555AMQ_README.txt.gz 2.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data is available on Series record

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