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Sample GSM2072457 Query DataSets for GSM2072457
Status Public on Mar 18, 2016
Title total RNA-seq from hematopoietic multipotent progenitor cell (ENCLB555AOX)
Sample type SRA
Source name Homo sapiens hematopoietic multipotent progenitor primary cell male
Organism Homo sapiens
Characteristics cell_type: hematopoietic multipotent progenitor cell
biomaterial_type: primary cell
description: hematopoietic progenitor cells- mobilized, from donor RO01679.
biosample encode accession: ENCBS485ENC (SAMN04284395)
age: unknown
donor_id: ENCDO116AAA
dev stage: unknown
passage number: 2
Sex: male
health state: unknown
lab: John Stamatoyannopoulos, UW
link: ENCBS485ENC at ENCODE;
link: Derived from ENCODE donor ENCDO116AAA;
link: cell isolation protocol;
link: ENCODE dbxrefs CD34+_Mobilized;
link: Heimfeld sample source;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from the whole cell fraction of independent isolates of mobilized CD34+ blood progenitor cells. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUA
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AOX
size range: >200
spikeins used: /references/ENCSR402QNO/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE78605 total RNA-seq from hematopoietic multipotent progenitor cell (ENCSR000CUA)
Reanalyzed by GSE111163
SRA SRX1603502
BioSample SAMN04284395
Named Annotation GSM2072457_ENCFF905VXY_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2072457_ENCFF748HEX_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2072457_ENCFF044YRQ_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2072457_ENCFF319ETS_plus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2072457_ENCFF044YRQ_minus_strand_signal_of_unique_reads_GRCh38.bigWig 397.4 Mb (ftp)(http) BIGWIG
GSM2072457_ENCFF115GKV_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2072457_ENCFF183JVF_minus_strand_signal_of_all_reads_hg19.bigWig 383.1 Mb (ftp)(http) BIGWIG
GSM2072457_ENCFF253XCQ_plus_strand_signal_of_all_reads_hg19.bigWig 400.0 Mb (ftp)(http) BIGWIG
GSM2072457_ENCFF319ETS_plus_strand_signal_of_unique_reads_GRCh38.bigWig 416.0 Mb (ftp)(http) BIGWIG
GSM2072457_ENCFF416XVK_minus_strand_signal_of_unique_reads_hg19.bigWig 396.3 Mb (ftp)(http) BIGWIG
GSM2072457_ENCFF694OQS_minus_strand_signal_of_all_reads_hg19.bigWig 421.9 Mb (ftp)(http) BIGWIG
GSM2072457_ENCFF748HEX_minus_strand_signal_of_all_reads_GRCh38.bigWig 425.7 Mb (ftp)(http) BIGWIG
GSM2072457_ENCFF759DVG_minus_strand_signal_of_unique_reads_hg19.bigWig 364.5 Mb (ftp)(http) BIGWIG
GSM2072457_ENCFF827LOA_gene_quantifications_hg19.tsv.gz 2.5 Mb (ftp)(http) TSV
GSM2072457_ENCFF837DTL_transcript_quantifications_GRCh38.tsv.gz 7.9 Mb (ftp)(http) TSV
GSM2072457_ENCFF879MQI_plus_strand_signal_of_unique_reads_hg19.bigWig 382.9 Mb (ftp)(http) BIGWIG
GSM2072457_ENCFF905VXY_plus_strand_signal_of_all_reads_GRCh38.bigWig 442.7 Mb (ftp)(http) BIGWIG
GSM2072457_ENCFF937PBW_plus_strand_signal_of_all_reads_hg19.bigWig 438.9 Mb (ftp)(http) BIGWIG
GSM2072457_ENCFF938QGM_transcript_quantifications_hg19.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2072457_ENCFF946AOF_plus_strand_signal_of_unique_reads_hg19.bigWig 415.4 Mb (ftp)(http) BIGWIG
GSM2072457_ENCLB555AOX_README.txt.gz 1.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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