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Sample GSM2072423 Query DataSets for GSM2072423
Status Public on Mar 18, 2016
Title polyA mRNA RNA-seq from endothelial cell of umbilical vein (ENCLB555AVK)
Sample type SRA
Source name Homo sapiens endothelial of umbilical vein primary cell male newborn
Organism Homo sapiens
Characteristics cell_type: endothelial cell of umbilical vein
biomaterial_type: primary cell
description: umbilical vein endothelial cells
biosample encode accession: ENCBS529ENC (SAMN04284426)
age: unknown
donor_id: ENCDO341AAA
dev stage: newborn
Sex: male
health state: unknown
lab: Thomas Gingeras, CSHL
link: ENCBS529ENC at ENCODE;
link: Derived from ENCODE donor ENCDO341AAA;
link: ENCODE dbxrefs HUVEC;
link: Lonza sample source;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on human HUVEC whole cell long polyA+ RNA
experiment encode accession: ENCSR000COZ
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2011-10-17
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AVK
size range: >200
spikeins used: /references/ENCSR402QNO/
Data processing See GSM*_README.txt supplementary file linked below
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10999
Series (1)
GSE78588 polyA mRNA RNA-seq from endothelial cell of umbilical vein (ENCSR000COZ)
SRA SRX1603459
BioSample SAMN04284426
Named Annotation GSM2072423_ENCFF890BTZ_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2072423_ENCFF723FTP_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2072423_ENCFF189BUI_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2072423_ENCFF563FKQ_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2072423_ENCFF170QMM_minus_strand_signal_of_unique_reads_hg19.bigWig 140.8 Mb (ftp)(http) BIGWIG
GSM2072423_ENCFF189BUI_minus_strand_signal_of_unique_reads_GRCh38.bigWig 149.0 Mb (ftp)(http) BIGWIG
GSM2072423_ENCFF209NMC_minus_strand_signal_of_unique_reads_hg19.bigWig 148.4 Mb (ftp)(http) BIGWIG
GSM2072423_ENCFF278MHA_plus_strand_signal_of_unique_reads_hg19.bigWig 152.5 Mb (ftp)(http) BIGWIG
GSM2072423_ENCFF322QPX_minus_strand_signal_of_all_reads_hg19.bigWig 154.4 Mb (ftp)(http) BIGWIG
GSM2072423_ENCFF530HNB_gene_quantifications_hg19.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2072423_ENCFF560ZLH_plus_strand_signal_of_all_reads_hg19.bigWig 157.4 Mb (ftp)(http) BIGWIG
GSM2072423_ENCFF563FKQ_minus_strand_signal_of_all_reads_GRCh38.bigWig 164.1 Mb (ftp)(http) BIGWIG
GSM2072423_ENCFF650CVW_gene_quantifications_GRCh38.tsv.gz 2.6 Mb (ftp)(http) TSV
GSM2072423_ENCFF690JZR_minus_strand_signal_of_all_reads_hg19.bigWig 162.8 Mb (ftp)(http) BIGWIG
GSM2072423_ENCFF723FTP_plus_strand_signal_of_unique_reads_GRCh38.bigWig 152.6 Mb (ftp)(http) BIGWIG
GSM2072423_ENCFF860IST_plus_strand_signal_of_all_reads_hg19.bigWig 165.8 Mb (ftp)(http) BIGWIG
GSM2072423_ENCFF867URU_transcript_quantifications_hg19.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2072423_ENCFF873DKO_plus_strand_signal_of_unique_reads_hg19.bigWig 144.8 Mb (ftp)(http) BIGWIG
GSM2072423_ENCFF887FYR_transcript_quantifications_GRCh38.tsv.gz 7.8 Mb (ftp)(http) TSV
GSM2072423_ENCFF890BTZ_plus_strand_signal_of_all_reads_GRCh38.bigWig 166.9 Mb (ftp)(http) BIGWIG
GSM2072423_ENCLB555AVK_README.txt.gz 2.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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