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Sample GSM2071642 Query DataSets for GSM2071642
Status Public on Mar 18, 2016
Title single cell RNA-seq from liver (ENCLB356IIP)
Sample type SRA
 
Source name Mus musculus strain B6NCrl liver tissue postnatal (0 days)
Organism Mus musculus
Characteristics antibody: Control
tissue_type: liver
biomaterial_type: tissue
description: single liver from pup 1
biosample encode accession: ENCBS094UZQ (SAMN04284001)
age: 0 day
donor_id: ENCDO956IXV
dev stage: postnatal
Sex: not collected
lab: Barbara Wold, Caltech
link: ENCBS094UZQ at ENCODE; https://www.encodeproject.org/ENCBS094UZQ/
link: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/
Extracted molecule total RNA
Extraction protocol extraction method: Ambion mirVana
extraction protocol: https://www.encodeproject.org/documents/428a184d-7fa1-4599-9d8d-749c2eba7edd/@@download/attachment/cms_055740.pdf, extraction protocol: https://www.encodeproject.org/documents/f0cc5a7f-96a5-4970-9f46-317cc8e2d6a4/@@download/attachment/cms_055423.pdf, general protocol: https://www.encodeproject.org/documents/5f5193b0-0c61-40c6-a286-b1f6d6f0c0da/@@download/attachment/SmartSeqProtocol.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR950BNG/
***************
biological replicate number: 1
technical replicate number: 1
description: Total RNA-seq on postnatal 0 day mouse liver (13pgs)
experiment encode accession: ENCSR950BNG
assay title: single cell RNA-seq
assembly: mm10
encode release date: 2014-09-29
lab: Barbara Wold, Caltech
library encode accession: ENCLB356IIP
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Feb 24, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL17021
Series (1)
GSE78489 single cell RNA-seq from liver (ENCSR950BNG)
Relations
SRA SRX1603321
BioSample SAMN04284001
Named Annotation GSM2071642_ENCFF497IWZ_signal_of_all_reads_mm10.bigWig
Named Annotation GSM2071642_ENCFF723TZR_signal_of_unique_reads_mm10.bigWig

Supplementary file Size Download File type/resource
GSM2071642_ENCFF235ZJY_gene_quantifications_mm10.tsv.gz 1.9 Mb (ftp)(http) TSV
GSM2071642_ENCFF497IWZ_signal_of_all_reads_mm10.bigWig 63.4 Mb (ftp)(http) BIGWIG
GSM2071642_ENCFF723TZR_signal_of_unique_reads_mm10.bigWig 47.4 Mb (ftp)(http) BIGWIG
GSM2071642_ENCFF740CJY_transcript_quantifications_mm10.tsv.gz 3.9 Mb (ftp)(http) TSV
GSM2071642_ENCLB356IIP_README.txt.gz 645 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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