GEO help: Mouse over screen elements for information.
Status
Public on Mar 28, 2004
Title
Mouse Liver Male 3
Sample type
RNA
Source name
Mouse Liver
Organism
Mus musculus
Extracted molecule
total RNA
Description
Triple selected polyA RNA for liver, kidney, ovary, testis, was obtained from Ambion (Austin, TX). Total RNA was obtained form Ambion for hypothalamus samples. All RNA samples had an agilent ratio greater than 1 indicating that degradation had not occurred. All RNA samples were prepared from a pool of 10 different animals. The total RNA samples were labeled for hybridization onto the microarray according to affymetrix protocols listed at:http://keck.med.yale.edu/affymetrix/protocols Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
Submission date
Mar 26, 2004
Last update date
May 27, 2005
Contact name
Joel Rozowsky
E-mail(s)
rozowsky@csb.yale.edu
Phone
203-432-5405
Organization name
Yale University
Department
Molecular Biophysics & Biochemistry
Lab
Gerstein Lab
Street address
266 Whitney Ave, Bass 437
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL339
Series (1)
GSE1148
Sex Specific Transciption in Mouse Tissues
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
171.2
P
0.012547
AFFX-BioB-M_at
392.7
P
0.001796
AFFX-BioB-3_at
214.9
P
0.005565
AFFX-BioC-5_at
711.1
P
0.000110
AFFX-BioC-3_at
424.0
P
0.000052
AFFX-BioDn-5_at
651.1
P
0.000095
AFFX-BioDn-3_at
3795.2
P
0.000147
AFFX-CreX-5_at
6317.5
P
0.000044
AFFX-CreX-3_at
11794.8
P
0.000044
AFFX-DapX-5_at
8.0
A
0.440646
AFFX-DapX-M_at
30.0
A
0.205732
AFFX-DapX-3_at
4.2
A
0.945787
AFFX-LysX-5_at
8.3
A
0.313723
AFFX-LysX-M_at
13.5
A
0.699394
AFFX-LysX-3_at
11.9
A
0.275076
AFFX-PheX-5_at
2.5
A
0.921998
AFFX-PheX-M_at
4.4
A
0.891021
AFFX-PheX-3_at
18.9
A
0.603080
AFFX-ThrX-5_at
13.1
A
0.411373
AFFX-ThrX-M_at
31.8
A
0.327079
Total number of rows: 22690 Table truncated, full table size 628 Kbytes .Supplementary data files not provided