|
| Status |
Public on Sep 01, 2016 |
| Title |
YM |
| Sample type |
genomic |
| |
|
| Source name |
YM cell line
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: YM
cell type: ABC DLBCL cells
disease state: activated B cell-like (ABC) subtype of diffuse large B cell lymphoma (DLBCL)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
QIAGEN AllPrep DNA/RNA Mini Protocol
Other: Genomic DNA was isolated using QIAGEN AllPrep DNA/RNA Mini Kit.
|
| Label |
biotin
|
| Label protocol |
Affymetrix Labeling Protocol
Other: Fragmented PCR products were terminally labeled with biotin according to the manufacturer's protocol.
|
| |
|
| Hybridization protocol |
Affymetrix Hybridization Protocol
Other: Fragmented single-stranded sense DNA were hybridized to the Affymetrix Genome-Wide Human SNP 6.0 array. Arrays were hybridized in the GeneChip Hybridization Oven 645 and stained in the GeneChip Fluidics Station 450.
|
| Scan protocol |
Scanning Protocol
Other: Arrays were scanned on a GeneChip Scanner 3000-7G (Affymetrix).
|
| Description |
No additional information.
|
| Data processing |
Data Processing Protocol
Calculation Method: The Affy SNP datsets were normalized and signal called by Affy GTC (version 4.2.0.26) using CNV analysis with the default parameters.
|
| |
|
| Submission date |
Sep 30, 2015 |
| Last update date |
Sep 01, 2016 |
| Contact name |
Louis M. Staudt |
| E-mail(s) |
lstaudt@mail.nih.gov
|
| Phone |
301-402-1892
|
| Organization name |
National Cancer Institute
|
| Department |
Lymphoid Malignancies Branch
|
| Lab |
Louis M Staudt
|
| Street address |
9000 Rockville Pike, Bldg 10, Rm 4N114
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platform ID |
GPL6801 |
| Series (1) |
| GSE73639 |
Targeting Non-proteolytic Protein Ubiquitination for the Treatment of Diffuse Large B Cell Lymphoma (Affy SNP6.0 Arrays) |
|
