|
| Status |
Public on Dec 21, 2016 |
| Title |
Eng_BM-HSC_72 |
| Sample type |
SRA |
| |
|
| Source name |
Eng_BM-HSC
|
| Organism |
Mus musculus |
| Characteristics |
cell type: engrafted bone marrow-derived hematopoietic stem cell
|
| Treatment protocol |
Described in paper
|
| Growth protocol |
Described in paper
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Described in paper
Described in paper
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
LIB015516_GEN00038344
|
| Data processing |
Alignment to transcriptome with HISAT 0.1.6.
Transcript quantification using Salmon 0.3.2.
Gene-level summarization.
Natural log transform (plus one pseudocount)
Genome_build: GRCm38
|
| |
|
| Submission date |
Aug 06, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Patrick Cahan |
| E-mail(s) |
patrick.cahan@jhmi.edu
|
| Organization name |
Johns Hopkins University School of Medicine
|
| Department |
ICE and Biomedical Engineering
|
| Lab |
Cahan Lab
|
| Street address |
733 North Broadway, MRB 653
|
| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21205 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE71794 |
Notch Activation Confers Enhanced Lymphoid Potential in Murine ESC/iPSC-derived HSC and Reconstitutes Adaptive Immunity In Vivo [RNA-Seq] |
| GSE71796 |
Notch Activation Confers Enhanced Lymphoid Potential in Murine ESC/iPSC-derived HSC and Reconstitutes Adaptive Immunity In Vivo |
|
| Relations |
| SRA |
SRX1135179 |
| BioSample |
SAMN03979540 |
