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Sample GSM1830435 Query DataSets for GSM1830435
Status Public on Jul 23, 2015
Title WB_statin_pt_66
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 62
Sex: F
smoking status: Former smoker
fev1% predicted: 80.4
fev1/fvc: 55.5
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.557798612
7892504 9.335688609
7892507 7.130726215
7892508 7.713686007
7892509 8.661163866
7892510 6.869192154
7892514 10.15967138
7892515 9.948993452
7892516 5.817344715
7892517 8.270324343
7892520 9.667078107
7892521 9.630020675
7892527 8.402824845
7892530 8.722543163
7892531 8.596691483
7892533 7.377788339
7892534 7.273143401
7892535 7.489203978
7892536 10.85780948
7892538 7.26486883

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830435_S862.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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