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Sample GSM1830377 Query DataSets for GSM1830377
Status Public on Jul 23, 2015
Title WB_non-statin_pt_177
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 67
Sex: M
smoking status: Former smoker
fev1% predicted: 40.5
fev1/fvc: 46.58
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.758901692
7892504 9.635379091
7892507 6.799739959
7892508 7.677065139
7892509 8.995150336
7892510 6.185837323
7892514 10.11666938
7892515 10.3659019
7892516 5.637853407
7892517 7.998297114
7892520 9.19009844
7892521 9.244050092
7892527 8.086171353
7892530 8.839034869
7892531 8.380689083
7892533 7.069020205
7892534 6.480573103
7892535 6.949771297
7892536 11.46748206
7892538 7.099726597

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830377_S997.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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