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Sample GSM1830240 Query DataSets for GSM1830240
Status Public on Jul 23, 2015
Title WB_non-statin_pt_64
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 66
Sex: M
smoking status: Former smoker
fev1% predicted: 42.4
fev1/fvc: 58.42
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 5.313461207
7892504 9.896771381
7892507 6.747805718
7892508 7.653204635
7892509 8.939392349
7892510 6.087090254
7892514 10.08901956
7892515 10.28014148
7892516 5.765971718
7892517 8.367610912
7892520 9.333957752
7892521 9.301626944
7892527 8.264990162
7892530 9.065114028
7892531 8.306866063
7892533 7.252166606
7892534 7.631816657
7892535 7.045014531
7892536 11.66912672
7892538 7.075303362

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830240_S139.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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