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Sample GSM1830231 Query DataSets for GSM1830231
Status Public on Jul 23, 2015
Title WB_non-statin_pt_55
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 73
Sex: M
smoking status: Former smoker
fev1% predicted: 42.8
fev1/fvc: 65.89
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.805102135
7892504 9.434099004
7892507 7.237569831
7892508 7.536660076
7892509 8.951462806
7892510 6.176051559
7892514 10.24081683
7892515 10.4025344
7892516 5.739197412
7892517 8.509706263
7892520 9.612987114
7892521 9.308740737
7892527 7.839954451
7892530 8.749660884
7892531 8.549135024
7892533 7.087228336
7892534 6.835982854
7892535 7.640864375
7892536 11.3236611
7892538 7.177159964

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830231_S821.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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