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Sample GSM173080 Query DataSets for GSM173080
Status Public on Apr 04, 2007
Title Rice MH63 Control2
Sample type RNA
 
Source name Rice MH63 Control2
Organism Oryza sativa
Characteristics Age:11 days
Biomaterial provider NKLCGI-Huang Limin et.al
Growth protocol Seedlings were grown in 1/2MS medium under a 16-h-light (2000 l×)/8-h-dark cycle at 25°C for 11 days.
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzol (Invitrogen, Carlsbad, CA, USA) as described by the manufacturer.
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Rice MH63 Control
Data processing GCOS 1.2
 
Submission date Mar 06, 2007
Last update date Apr 04, 2007
Contact name Qianwen Sun
E-mail(s) sunqianwen@webmail.hzau.edu.cn
Phone 862787281800
URL http://redb.ncpgr.cn/
Organization name Huazhong Agriculture University
Department National Key Laboratory of Crop Genetic Improvement
Lab Gene Center
Street address Luoshi Road
City Wuhan
State/province Hubei
ZIP/Postal code 430070
Country China
 
Platform ID GPL2025
Series (1)
GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice

Data table header descriptions
ID_REF
VALUE GCOS 1.2
ABS_CALL Rice-CK2
DETECTION P-VALUE Rice-CK2

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 105.589 P 0.000224668
AFFX-BioB-M_at 154.886 P 4.42873e-05
AFFX-BioB-3_at 176.891 P 4.42873e-05
AFFX-BioC-5_at 337.245 P 4.42873e-05
AFFX-BioC-3_at 328.578 P 4.42873e-05
AFFX-BioDn-5_at 629.044 P 4.42873e-05
AFFX-BioDn-3_at 1628.27 P 4.42873e-05
AFFX-CreX-5_at 4151.51 P 4.42873e-05
AFFX-CreX-3_at 5347.15 P 4.42873e-05
AFFX-DapX-5_at 127.009 P 4.42873e-05
AFFX-DapX-M_at 363.058 P 5.16732e-05
AFFX-DapX-3_at 941.245 P 4.42873e-05
AFFX-LysX-5_at 41.8381 P 0.000509415
AFFX-LysX-M_at 52.0016 P 4.42873e-05
AFFX-LysX-3_at 100.059 P 0.000126798
AFFX-PheX-5_at 60.696 P 5.16732e-05
AFFX-PheX-M_at 68.7779 P 0.000126798
AFFX-PheX-3_at 114.189 P 0.000126798
AFFX-ThrX-5_at 28.0536 P 8.14279e-05
AFFX-ThrX-M_at 84.1578 P 4.42873e-05

Total number of rows: 57381

Table truncated, full table size 2178 Kbytes.




Supplementary file Size Download File type/resource
GSM173080.CEL.gz 4.3 Mb (ftp)(http) CEL
GSM173080.EXP.gz 503 b (ftp)(http) EXP
GSM173080.jpg.gz 128.4 Kb (ftp)(http) JPG

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