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Sample GSM171081 Query DataSets for GSM171081
Status Public on Mar 01, 2007
Title TAFII p250 (6B3) HeLa RenLab ENCODE PCR tiling array replicate 15 ENC1759
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from HeLa cells using TAFII p250 (6B3) antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from HeLa cells using TAFII p250 (6B3) antibody
Extracted molecule genomic DNA
Extraction protocol NimbleGen
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from HeLa cells
Organism Homo sapiens
Characteristics Input DNA from HeLa cells
Extracted molecule genomic DNA
Extraction protocol NimbleGen
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol NimbleGen
Scan protocol NimbleGen
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Feb 23, 2007
Last update date Feb 26, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Platform ID GPL1454
Series (1)
GSE7118 Ludwig Institute/UCSD ENCODE project March 2007 Release

Data table header descriptions
ID_REF ID_REF
VALUE same as UNF_VALUE but with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 -0.693 0.79 7.891e-01 253.00 319.41 313 310 129 60 68 50 496 492 122 87 88 40 0 -0.693
2 -0.545 0.88 6.729e-01 229.00 260.84 289 287 118 60 67 50 420 415 112 86 87 39 0 -0.545
3 -0.757 0.76 8.313e-01 522.00 688.81 581 589 236 59 65 51 970 950 256 88 90 43 0 -0.757
4 -0.631 0.83 7.485e-01 445.00 538.08 506 504 175 61 70 71 775 783 178 86 88 42 0 -0.631
5 -0.807 0.73 8.583e-01 372.00 508.40 429 434 170 57 65 55 737 715 200 86 88 43 0 -0.807
6 -0.472 0.92 6.125e-01 1001.00 1083.97 1061 1038 329 60 74 88 1478 1468 302 90 105 126 0 -0.472
7 -0.825 0.72 8.740e-01 739.00 1022.27 796 790 256 57 68 65 1397 1374 254 88 96 90 0 -0.825
8 -0.829 0.72 8.707e-01 296.00 410.78 356 362 152 60 68 56 614 610 128 88 90 49 0 -0.829
9 -0.926 0.67 9.081e-01 420.00 623.20 478 501 206 58 64 47 883 889 264 85 86 37 0 -0.926
10 -1.018 0.63 9.384e-01 320.00 506.06 378 392 165 58 64 48 732 700 182 84 85 37 0 -1.018
11 -0.976 0.65 9.302e-01 460.00 706.77 519 528 183 59 65 47 990 993 217 85 86 36 0 -0.976
12 -0.958 0.66 9.260e-01 525.00 796.58 584 597 189 59 64 47 1107 1102 221 87 88 37 0 -0.958
13 -0.862 0.70 8.909e-01 500.00 709.89 558 559 199 58 63 47 997 986 160 88 87 37 0 -0.862
14 -0.790 0.74 8.580e-01 1978.00 2670.88 2035 2003 577 57 62 45 3507 3410 567 87 87 37 0 -0.790
15 -0.835 0.72 8.770e-01 486.00 677.09 543 557 206 57 62 45 951 935 178 84 86 37 0 -0.835
16 -0.732 0.77 8.248e-01 1104.00 1432.28 1160 1154 290 56 62 46 1918 1888 315 84 85 38 0 -0.732
17 -0.956 0.66 9.232e-01 570.00 863.74 629 619 256 59 64 48 1193 1161 265 87 87 37 0 -0.956
18 -0.942 0.67 9.217e-01 1366.00 2050.02 1426 1465 466 60 65 46 2712 2774 528 87 87 37 0 -0.942
19 1.28 4.269e-01 10.00 7.81 55 60 42 57 63 46 89 93 60 87 88 38 -50 0
20 -0.602 0.84 7.327e-01 3335.00 3953.99 3392 3345 602 57 63 47 5150 5062 659 87 88 38 0 -0.602

Total number of rows: 25246

Table truncated, full table size 2286 Kbytes.




Supplementary file Size Download File type/resource
GSM171081.gpr.gz 1.9 Mb (ftp)(http) GPR

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