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Sample GSM171073 Query DataSets for GSM171073
Status Public on Mar 01, 2007
Title H3K27me3 HeLa RenLab ENCODE PCR tiling array replicate 3 ENC1715
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from HeLa cells using H3K27me3 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from HeLa cells using H3K27me3 antibody
Extracted molecule genomic DNA
Extraction protocol NimbleGen
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from HeLa cells
Organism Homo sapiens
Characteristics Input DNA from HeLa cells
Extracted molecule genomic DNA
Extraction protocol NimbleGen
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol NimbleGen
Scan protocol NimbleGen
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Feb 23, 2007
Last update date Feb 26, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Platform ID GPL1454
Series (1)
GSE7118 Ludwig Institute/UCSD ENCODE project March 2007 Release

Data table header descriptions
ID_REF ID_REF
VALUE same as UNF_VALUE but with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 -0.182 0.94 7.855e-01 5903.00 6298.92 6061 5651 2112 158 195 181 7294 6967 2405 599 618 242 0 -0.182
2 -0.346 0.84 9.849e-01 4805.00 5745.70 4967 4931 1843 162 210 226 6690 6516 2032 583 622 294 0 -0.346
3 -0.316 0.85 9.741e-01 15333.00 17960.61 15496 14784 4920 163 207 197 19677 18279 5388 587 620 294 0 -0.316
4 -0.269 0.88 9.400e-01 11267.00 12772.83 11423 11097 3216 156 194 193 14156 13656 3446 580 613 289 0 -0.269
5 -0.291 0.87 9.606e-01 10869.00 12508.45 11038 10873 2431 169 299 739 13898 13733 2572 603 713 817 0 -0.291
6 -0.128 0.97 6.366e-01 19984.00 20543.21 20145 19989 3244 161 336 1165 22445 22226 3012 610 800 1419 0 -0.128
7 -0.148 0.96 6.986e-01 14934.00 15564.30 15109 14455 3057 175 284 621 17162 16844 2958 619 740 870 0 -0.148
8 -0.283 0.87 9.549e-01 6502.00 7443.92 6659 6612 1466 157 198 188 8507 8524 1448 595 629 272 0 -0.283
9 -0.278 0.88 9.464e-01 7988.00 9112.02 8126 7908 2827 138 176 179 10270 9945 2991 585 598 220 0 -0.278
10 -0.291 0.87 9.611e-01 6812.00 7843.77 6962 6913 1615 150 181 150 8924 8974 1636 587 597 213 0 -0.291
11 -0.259 0.89 9.277e-01 13171.00 14831.38 13316 12921 4242 145 173 139 16342 15326 4844 578 585 201 0 -0.259
12 -0.332 0.84 9.828e-01 9603.00 11375.68 9752 9512 2121 149 180 145 12662 12544 2451 571 587 204 0 -0.332
13 -0.201 0.92 8.387e-01 11295.00 12213.03 11446 11363 1742 151 183 150 13566 13605 1666 585 590 200 0 -0.201
14 -0.119 0.98 6.071e-01 42139.00 43059.37 42279 40697 8561 140 173 145 46349 44692 9015 582 597 199 0 -0.119
15 -0.208 0.92 8.504e-01 9042.00 9828.94 9189 9055 2370 147 178 142 11026 10506 2680 579 591 199 0 -0.208
16 -0.281 0.87 9.519e-01 13417.00 15335.67 13562 12689 3445 145 176 154 16883 15864 3787 583 594 203 0 -0.281
17 -0.266 0.88 9.391e-01 7564.00 8555.99 7707 7614 1564 143 173 150 9671 9523 1602 577 593 213 0 -0.266
18 -0.333 0.84 9.835e-01 19365.00 22952.70 19510 19587 3782 145 175 142 24981 25517 4008 585 604 218 0 -0.333
19 0.66 6.561e-01 10.00 15.05 138 176 162 145 176 217 662 664 218 646 660 217 -50 0
20 -0.176 0.94 7.797e-01 36826.00 39144.54 36978 36362 6059 152 188 182 42256 41324 6691 650 664 218 0 -0.176

Total number of rows: 25246

Table truncated, full table size 2628 Kbytes.




Supplementary file Size Download File type/resource
GSM171073.gpr.gz 2.1 Mb (ftp)(http) GPR

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