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Sample GSM171017 Query DataSets for GSM171017
Status Public on Mar 01, 2007
Title p300(C-20) IMR90 RenLab ENCODE PCR tiling array replicate 3 slide ENC1681p300
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from IMR90 cells using p300(C-20) antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from IMR90 cells using p300(C-20) antibody
Extracted molecule genomic DNA
Extraction protocol NimbleGen
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from IMR90 cells
Organism Homo sapiens
Characteristics Input DNA from IMR90 cells
Extracted molecule genomic DNA
Extraction protocol NimbleGen
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol NimbleGen
Scan protocol NimbleGen
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Feb 23, 2007
Last update date Feb 26, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Platform ID GPL1454
Series (1)
GSE7118 Ludwig Institute/UCSD ENCODE project March 2007 Release

Data table header descriptions
ID_REF ID_REF
VALUE same as UNF_VALUE but with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 -0.370 0.73 9.232e-01 2683.00 3671.58 2818 2902 881 135 186 211 3845 3811 1034 377 388 147 0 -0.370
2 -0.276 0.78 8.669e-01 2006.00 2571.59 2144 2177 861 138 195 264 2802 2814 989 373 386 149 0 -0.276
3 -0.459 0.69 9.547e-01 5096.00 7418.33 5242 5256 1395 146 286 723 7394 7359 2335 387 1144 4986 0 -0.459
4 0.94 5.081e-01 10.00 10.59 145 185 186 138 192 228 367 378 141 375 382 145 -50 0
5 -0.566 0.64 9.784e-01 3786.00 5935.09 3930 3940 951 144 191 211 5982 5949 1453 376 389 152 0 -0.566
6 -0.199 0.82 8.172e-01 13625.00 16562.35 13756 13457 4105 131 183 257 16029 15287 3899 385 391 143 0 -0.199
7 -0.399 0.72 9.383e-01 10051.00 14028.88 10190 10172 2352 139 189 265 13632 13547 2133 381 389 143 0 -0.399
8 -0.610 0.62 9.836e-01 1982.00 3202.58 2125 2164 644 143 186 241 3397 3405 825 372 382 140 0 -0.610
9 -0.672 0.59 9.895e-01 3057.00 5154.83 3193 3161 922 136 181 192 5243 5170 1339 374 381 142 0 -0.672
10 -0.784 0.55 9.957e-01 2572.00 4690.06 2724 2754 829 152 199 256 4810 4600 1005 380 393 156 0 -0.784
11 -0.604 0.62 9.837e-01 4625.00 7443.74 4759 4897 1241 134 183 210 7407 7485 1543 376 389 155 0 -0.604
12 -0.808 0.54 9.953e-01 2759.00 5112.48 2898 2877 1231 139 184 197 5205 4906 2004 376 383 144 0 -0.808
13 -0.380 0.73 9.260e-01 4704.00 6479.26 4847 4615 1757 143 189 208 6508 6050 1942 388 393 154 0 -0.380
14 -0.280 0.78 8.794e-01 22396.00 28784.03 22539 21826 4068 143 205 360 27574 26460 4959 386 397 161 0 -0.280
15 -0.353 0.74 9.196e-01 5444.00 7359.05 5591 5624 1105 147 235 449 7344 7220 991 393 421 305 0 -0.353
16 -0.364 0.73 9.246e-01 8681.00 11831.01 8833 8765 1778 152 213 313 11564 11367 1797 389 409 178 0 -0.364
17 -0.552 0.64 9.770e-01 3956.00 6141.54 4099 4165 1102 143 204 283 6185 6120 979 384 396 153 0 -0.552
18 -0.942 0.49 9.988e-01 5684.00 11557.86 5821 5802 1735 137 182 204 11303 11522 2044 386 397 151 0 -0.942
19 -0.911 0.50 9.982e-01 1407.00 2800.27 1540 1676 691 133 186 226 3054 3187 733 409 424 184 0 -0.911
20 -0.586 0.63 9.824e-01 12993.00 20647.89 13137 12846 2293 144 185 201 19919 19647 2845 416 423 145 0 -0.586

Total number of rows: 25246

Table truncated, full table size 2566 Kbytes.




Supplementary file Size Download File type/resource
GSM171017.gpr.gz 2.3 Mb (ftp)(http) GPR

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