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Sample GSM1708 Query DataSets for GSM1708
Status Public on Jun 27, 2002
Title 110 antigens in 10X FCS,mix#6
Sample type protein
 
Channel 1
Source name reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.33
Lot batch = 11cl51
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL171
Series (2)
GSE46 Antibody Arrays Figure 6 10X FCS
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 380 275 287 171 16 193 155 153 16 169 .052 0 -4.165 .185 45 10 17.938 17.938 .056 .056 .003 1544 137 262 275 143 156 -4.165
2 743 308 971 181 23 289 158 156 23 179 1.106 0 -5.4 .184 45 16 42.217 42.217 .024 .024 .031 1544 137 261 274 183 196 -5.4
3 293 261 154 170 5 179 165 163 5 168 .039 0 -4.945 .254 48 10 30.8 30.8 .032 .032 .009 1544 137 260 273 223 236 -4.945
4 375 279 142 356 180 244 176 174 178 352 .505 0 .326 1.183 44 62 .789 .798 1.268 1.254 .47 1544 137 259 272 264 277 .326
5 286 269 134 360 173 195 187 185 171 356 .578 0 .352 1.188 45 57 .775 .784 1.291 1.276 .65 1544 137 258 271 304 317 .352
6 291 272 171 465 275 195 190 188 272 460 .527 0 .67 1.402 50 75 .622 .629 1.608 1.591 .63 1544 137 257 270 344 357 .67
7 339 271 142 203 226 204 201 200 0 .23 44 3 1544 137 256 269 385 398
8 308 283 155 208 4 210 204 201 4 205 .133 0 -5.276 .25 48 8 38.75 38.75 .026 .026 .033 1544 137 256 269 425 438 -5.276
9 348 279 118 189 215 202 200 187 0 .259 43 2 1544 137 255 268 465 478
10 539 310 106 193 20 227 173 171 20 191 .184 0 -2.406 .39 28 12 5.3 5.3 .189 .189 .081 1544 137 301 314 143 156 -2.406
11 645 324 260 173 7 201 166 164 7 171 .053 0 -5.215 .296 27 9 37.143 37.143 .027 .027 .002 1544 137 301 314 184 197 -5.215
12 438 307 100 190 14 196 176 174 14 188 .088 0 -2.837 .176 36 6 7.143 7.143 .14 .14 .022 1544 137 300 313 224 237 -2.837
13 415 293 550 342 145 211 197 195 143 338 .21 0 -1.943 .267 54 23 3.793 3.846 .264 .26 .068 1544 137 299 312 264 277 -1.943
14 498 304 224 229 24 305 205 202 24 226 .13 0 -3.222 .222 52 12 9.333 9.333 .107 .107 .032 1544 137 298 311 305 318 -3.222
15 373 295 703 351 140 252 211 208 139 347 .951 0 -2.338 .283 59 31 5.021 5.058 .199 .198 .224 1544 137 297 310 345 358 -2.338
16 772 310 291 220 13 397 207 204 13 217 .25 0 -4.484 .338 39 9 22.385 22.385 .045 .045 .036 1544 137 296 309 386 399 -4.484
17 1022 361 1999 393 178 279 215 212 177 389 .605 0 -3.497 .257 39 13 11.23 11.294 .089 .089 .123 1544 137 296 309 426 439 -3.497
18 664 334 445 255 42 239 213 210 42 252 .326 0 -3.405 .108 48 8 10.595 10.595 .094 .094 .081 1544 137 295 308 466 479 -3.405
19 362 323 62 193 13 184 180 178 13 191 .007 0 -2.254 .528 21 8 4.769 4.769 .21 .21 .002 1544 137 341 354 144 157 -2.254
20 581 354 43 188 4 213 184 182 4 186 0 -3.426 .504 13 8 10.75 10.75 .093 .093 1544 137 341 354 184 197 -3.426

Total number of rows: 1152

Table truncated, full table size 122 Kbytes.




Supplementary data files not provided
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