|
| Status |
Public on May 20, 2015 |
| Title |
gray-00298: b0372-scan |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Cancer
|
| Organism |
Homo sapiens |
| Characteristics |
chemotherapy treatment: yes
p53 positive (ihc): yes
Sex: female
erbb2 positive (ihc): yes
distal recurrence: yes
distal recurrence time: 0.67
organism part: mammary gland
family history: yes
followup time: 0.67
ethnicity: African American
dead of disease: yes
tumor grading: 1
tumor staging: 2
disease state: breast cancer
hormonal therapy: no
estrogen receptor status: negative
biosource type: frozen_sample
progesterone receptor status: negative
alive at endpoint: dead
node positive: yes
age at diagnosis: 31
recurrence time: 0.67
tumor size (mm): 4.5
recurrence: yes
radiation treatment: yes
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
See mage-tab files linked to series entry for additional details
|
| Label |
Cy3
|
| Label protocol |
See mage-tab files linked to series entry for additional details
|
| |
|
| Channel 2 |
| Source name |
normal female genomic DNA
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
See mage-tab files linked to series entry for additional details
|
| Label |
Cy5
|
| Label protocol |
See mage-tab files linked to series entry for additional details
|
| |
|
| |
| Hybridization protocol |
See mage-tab files linked to series entry for additional details
|
| Scan protocol |
See mage-tab files linked to series entry for additional details
|
| Description |
Array Type: HA114
|
| Data processing |
See mage-tab files linked to series entry for additional details
|
| |
|
| Submission date |
May 19, 2015 |
| Last update date |
May 20, 2015 |
| Contact name |
Mervi Heiskanen |
| E-mail(s) |
mervi.heiskanen@nih.gov
|
| Phone |
2402765175
|
| Organization name |
NCI
|
| Department |
CBIIT
|
| Street address |
9609 Medical Center Drive, 1W378
|
| City |
Rockville |
| State/province |
MD |
| ZIP/Postal code |
20850 |
| Country |
USA |
| |
|
| Platform ID |
GPL20217 |
| Series (1) |
| GSE69035 |
caArray_gray-00298: Genomic and transcriptional aberrations linked to breast cancer pathophysiologies - Genome Copy Number (Scanning and OncoBAC) |
|
