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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 24, 2015 |
| Title |
PC02 |
| Sample type |
SRA |
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| Source name |
A375p cells
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| Organism |
Homo sapiens |
| Characteristics |
cell line: melanoma cell line A375P
agent: CONTROL
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| Treatment protocol |
10 μM of either DEL22379, SCH772984 or DMSO as a control for two hours
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNeasy mini kit (Qiagen, Germany)
TruSeq Stranded mRNA Illumina
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 1500 |
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| Data processing |
Alignment with Tophat
Differential Expression with Cufflinks and DE
Genome_build: hg19
Supplementary_files_format_and_content: The .txt and .csv files include FPKM values for each Sample and Differential Expression
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| Submission date |
Apr 24, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Piero Crespo |
| E-mail(s) |
crespop@unican.es
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| Phone |
942200959
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| Organization name |
IBBTEC
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| Street address |
c/Albert Einstein, 22
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| City |
SANTANDER |
| State/province |
Cantabria |
| ZIP/Postal code |
39011 |
| Country |
Spain |
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| Platform ID |
GPL18460 |
| Series (1) |
| GSE68230 |
Small molecule inhibition of ERK dimerization prevents tumorigenesis by Ras-ERK pathway oncogenes |
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| Relations |
| BioSample |
SAMN03566803 |
| SRA |
SRX1008068 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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