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Sample GSM1664805 Query DataSets for GSM1664805
Status Public on Apr 23, 2015
Title DC HER2 tumor at T3, biological replicate 2
Sample type RNA
 
Source name tumor material
Organism Mus musculus
Characteristics tissue: tumor
strain: C57BL/6
dc gene: HER2
cachexia status: no cachexia
Extracted molecule total RNA
Extraction protocol Total RNA extracted using Qiagen Rneasy Kit following manufacturer's protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix hybridization protocol
Scan protocol Arrays were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from tumor generated by DC mouse model
Data processing The data were analyzed using the affy package from Bioconductor 3.0
 
Submission date Apr 22, 2015
Last update date Apr 23, 2015
Contact name Lorena Lerner
Organization name AVEO Oncology
Street address 650 E. Kendall Street
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL1261
Series (1)
GSE68162 Expression data from MAP3K11/GDF15 axis is a critical driver of cancer cachexia

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1415670_at 9.818539476
1415671_at 9.604137365
1415672_at 10.60764629
1415673_at 9.661762489
1415674_a_at 10.33409213
1415675_at 8.922686368
1415676_a_at 11.35844259
1415677_at 8.859993611
1415678_at 10.11717309
1415679_at 10.97395224
1415680_at 9.543529915
1415681_at 9.975334046
1415682_at 7.691537945
1415683_at 11.3463551
1415684_at 8.182773575
1415685_at 8.647894513
1415686_at 9.867324313
1415687_a_at 12.23189086
1415688_at 10.34905121
1415689_s_at 9.531634701

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM1664805_HER2_T3_2.cel.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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