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Sample GSM161898 Query DataSets for GSM161898
Status Public on Feb 12, 2007
Title NA15510_Nsp_COMM_rep3
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 4
Biomaterial provider Coriell NA15510 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA15510
Extracted molecule genomic DNA
Extraction protocol DNA was obtained from NIGHS Human Genetic Cell Repository
Label DNA Labeling Reagent, Affymetrix, Inc.
Label protocol According to standard Affymetrix procedures
 
Hybridization protocol According to standard Affymetrix procedures
Scan protocol According to standard Affymetrix procedures
Description Samples NA10851 or NA15510 were hybridized to 500K mapping arrays in triplicates
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Feb 12, 2007
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotype call
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.007813 19.111 0.125465 0.000000
SNP_A-1780618 AA 0.007813 9.525 0.915799 0.975385
SNP_A-1780632 AB 0.007813 13.328 0.642857 0.527027
SNP_A-1780654 AA 0.007813 24.097 1.000000 0.977019
SNP_A-4192495 AA 0.007813 11.190 0.866013 0.949607
SNP_A-4192498 AB 0.042969 6.929 0.318563 0.421148
SNP_A-1780732 BB 0.015625 10.807 0.000000 0.066929
SNP_A-1780848 AB 0.007813 10.391 0.532481 0.618566
SNP_A-1780985 BB 0.007813 12.107 0.000000 0.000000
SNP_A-1781022 AB 0.046875 4.257 0.593664 0.813278
SNP_A-1781076 BB 0.023438 17.627 0.208571 0.000000
SNP_A-1781249 AA 0.007813 9.345 1.000000 0.872045
SNP_A-1781276 AB 0.023438 8.752 0.455746 0.628083
SNP_A-1781302 AB 0.007813 10.696 0.400000 0.475397
SNP_A-1781510 AA 0.023438 17.953 0.911360 1.000000
SNP_A-4192564 BB 0.007813 6.037 0.000000 0.149408
SNP_A-1781614 AB 0.023438 14.033 0.515487 0.568738
SNP_A-1781633 AA 0.007813 23.603 1.000000 1.000000
SNP_A-1781764 AA 0.062500 11.234 0.924968 0.707627
SNP_A-1781829 AA 0.007813 5.913 0.911650 0.795455

Total number of rows: 262264

Table truncated, full table size 12949 Kbytes.




Supplementary file Size Download File type/resource
GSM161898.CEL.gz 25.1 Mb (ftp)(http) CEL
GSM161898.raw.txt.gz 24.7 Mb (ftp)(http) TXT

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