NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM161894 Query DataSets for GSM161894
Status Public on Feb 12, 2007
Title NA10851_Nsp_COMM_rep2
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Male Cell lot number: 3
Biomaterial provider Coriell NA10851 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10851
Extracted molecule genomic DNA
Extraction protocol DNA was obtained from NIGHS Human Genetic Cell Repository
Label DNA Labeling Reagent, Affymetrix, Inc.
Label protocol According to standard Affymetrix procedures
 
Hybridization protocol According to standard Affymetrix procedures
Scan protocol According to standard Affymetrix procedures
Description Samples NA10851 or NA15510 were hybridized to 500K mapping arrays in triplicates
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Feb 12, 2007
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotype call
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.007813 7.473 0.117552 0.124123
SNP_A-1780618 AB 0.007813 6.267 0.453846 0.351492
SNP_A-1780632 BB 0.007813 15.309 0.032544 0.000000
SNP_A-1780654 AA 0.007813 12.260 0.963490 0.896000
SNP_A-4192495 AB 0.015625 6.062 0.665698 0.470996
SNP_A-4192498 AB 0.126953 3.360 0.294479 0.400369
SNP_A-1780732 BB 0.015625 10.923 0.000000 0.000000
SNP_A-1780848 BB 0.039063 6.167 0.000000 0.163293
SNP_A-1780985 BB 0.015625 8.852 0.000000 0.000000
SNP_A-1781022 AA 0.007813 8.287 1.000000 1.000000
SNP_A-1781076 BB 0.062500 13.943 0.359375 0.000000
SNP_A-1781249 AB 0.062500 5.358 0.389406 0.449324
SNP_A-1781276 AB 0.062500 5.529 0.500000 0.700680
SNP_A-1781302 AB 0.015625 7.424 0.448092 0.579268
SNP_A-1781510 AA 0.007813 15.823 0.945269 1.000000
SNP_A-4192564 BB 0.007813 12.792 0.044979 0.014640
SNP_A-1781614 AB 0.007813 9.363 0.571429 0.589359
SNP_A-1781633 AB 0.007813 6.704 0.391403 0.328571
SNP_A-1781764 BB 0.007813 8.089 0.144361 0.122222
SNP_A-1781829 AA 0.062500 5.441 1.000000 0.771685

Total number of rows: 262264

Table truncated, full table size 12917 Kbytes.




Supplementary file Size Download File type/resource
GSM161894.CEL.gz 27.0 Mb (ftp)(http) CEL
GSM161894.raw.txt.gz 26.0 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap