|
| Status |
Public on Feb 21, 2015 |
| Title |
Basilar papilla 144 control bs2 |
| Sample type |
SRA |
| |
|
| Source name |
Basilar papilla
|
| Organism |
Gallus gallus |
| Characteristics |
treatment: none
time point: 144hr
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Chicken basilar papilla were dissected and treated with streptomycin for 24 hours and recovered for specific time period. Total RNA was harvested with Trizol.
RNA libraries were prepared following Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
Sequences were mapped to gga3 using Tophat v1.4.0 with defaul settings
Alignment files (.bam) were inputed to Partek Genomics Suite v6.6 to caculate RPKM
Genome_build: gga3
Supplementary_files_format_and_content: tab-delimited text files include RPKM values of individual sample
|
| |
|
| Submission date |
Feb 19, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Michael Lovett |
| E-mail(s) |
m.lovett@imperial.ac.uk
|
| Phone |
4407714051264
|
| Organization name |
Imperial College
|
| Department |
NHLI
|
| Lab |
Lovett Lab
|
| Street address |
Dovehouse St
|
| City |
London |
| State/province |
London |
| ZIP/Postal code |
SW3 6LY |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL16133 |
| Series (1) |
| GSE66101 |
The Transcriptome of Basilar Papilla Hair Cell Regeneration in the Avian Inner Ear |
|
| Relations |
| BioSample |
SAMN03354485 |
| SRA |
SRX883949 |
