|
| Status |
Public on Apr 01, 2015 |
| Title |
Melanoma tumor sample from patient 188 |
| Sample type |
RNA |
| |
|
| Source name |
Malignant melanoma
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
age: 52
tumor stage: General
tissue: NA
distant metastasis free survival in days: NA
distant metastasis free survival (1=death, 0=alive): NA
disease specific survival in days: 189
disease specific survival (1=death, 0=alive): 1
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted using the Allprep kit (DNA/RNA mini kit) from Qiagen in accordance with the prescribed protocol provided with the kit. Quality control was performed using a Bioanalyser (Agilent).
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
|
| |
|
| Hybridization protocol |
Standard protocol for Whole-Genome Expression Direct Hybridization Assay was used (Illumina).
|
| Scan protocol |
Arrays were scanned using the iScan Reader (Illumina).
|
| Description |
replicate 1
LuM188
|
| Data processing |
The data was normalized using the cubic spline method.
|
| |
|
| Submission date |
Feb 12, 2015 |
| Last update date |
Apr 01, 2015 |
| Contact name |
Göran Jönsson |
| E-mail(s) |
goran_b.jonsson@med.lu.se
|
| Organization name |
Lund University
|
| Street address |
Scheelevägen 8
|
| City |
Lund |
| ZIP/Postal code |
22381 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL10558 |
| Series (1) |
| GSE65904 |
Whole-genome expression analysis of melanoma tumor biopsies from a population-based cohort. |
|
