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Sample GSM1588849

Query DataSets for GSM1588849

Status

Public on Sep 15, 2015

Title

Pt7-baseline.replicate

Sample type

RNA

Source name

tumor biopsy

Organism

Homo sapiens

Characteristics

cell type: melanoma
mapki sensitivity: sensitive
mapki treatment: none

Extracted molecule

total RNA

Extraction protocol

total RNA

Label

biotin

Label protocol

Not provided

Hybridization protocol

Not provided

Scan protocol

Not provided

Description

Patient 7 melanoma, pre MAPKi treatment, 1st biopsy, replicate

Data processing

CEL files are loaded using oligo R package. Probe set definition is based on pd.hugene.2.1.st R package. Gene level raw expression values is computed by fitProbeLevelModel function using the 'target=core' argument. Expression values is then RMA normalized.
pd.hugene.2.1.st R package

Submission date

Jan 22, 2015

Last update date

Dec 03, 2024

Contact name

Willy Hugo

E-mail(s)

hwilly@mednet.ucla.edu

Organization name

University of California, Los Angeles

Department

Medicine

Street address

10833 Le Conte Ave

City

Los Angeles

State/province

California

ZIP/Postal code

90095

Country

USA

Platform ID

GPL17692

Series (2)

GSE65184	Expression changes in pre MAPKi treatment and post MAPKi resistance Melanomas
GSE65186	Non-genomic and Immune Evolution in Melanoma with Acquired MAPKi Resistance

Data table header descriptions
ID_REF
VALUE	RMA normalized, gene-level expression values

Data table
ID_REF	VALUE
16657436	4.178397605
16657445	2.767767075
16657450	8.210398604
16657469	6.224214203
16657473	4.185881689
16657480	5.155792786
16657492	4.834925358
16657506	5.549852684
16657509	3.401173471
16657514	5.42212318
16657527	5.162422201
16657529	5.014246222
16657534	5.279931604
16657554	5.695107162
16657572	6.018570988
16657594	6.443424705
16657598	6.157387726
16657647	3.942465938
16657650	4.781080295
16657652	3.042291356

Total number of rows: 29329

Table truncated, full table size 598 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1588849_Pt7-BASELINE-D.ga.CEL.gz	5.1 Mb	(ftp)(http)	CEL
Processed data included within Sample table