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Sample GSM1588848

Query DataSets for GSM1588848

Status

Public on Sep 15, 2015

Title

Pt7-baseline

Sample type

RNA

Source name

tumor biopsy

Organism

Homo sapiens

Characteristics

cell type: melanoma
mapki sensitivity: sensitive
mapki treatment: none

Extracted molecule

total RNA

Extraction protocol

total RNA

Label

biotin

Label protocol

Not provided

Hybridization protocol

Not provided

Scan protocol

Not provided

Description

Patient 7 melanoma, pre MAPKi treatment, 1st biopsy

Data processing

CEL files are loaded using oligo R package. Probe set definition is based on pd.hugene.2.1.st R package. Gene level raw expression values is computed by fitProbeLevelModel function using the 'target=core' argument. Expression values is then RMA normalized.
pd.hugene.2.1.st R package

Submission date

Jan 22, 2015

Last update date

Dec 03, 2024

Contact name

Willy Hugo

E-mail(s)

hwilly@mednet.ucla.edu

Organization name

University of California, Los Angeles

Department

Medicine

Street address

10833 Le Conte Ave

City

Los Angeles

State/province

California

ZIP/Postal code

90095

Country

USA

Platform ID

GPL17692

Series (2)

GSE65184	Expression changes in pre MAPKi treatment and post MAPKi resistance Melanomas
GSE65186	Non-genomic and Immune Evolution in Melanoma with Acquired MAPKi Resistance

Data table header descriptions
ID_REF
VALUE	RMA normalized, gene-level expression values

Data table
ID_REF	VALUE
16657436	4.23477645
16657445	4.098813018
16657450	8.322205892
16657469	6.348480551
16657473	3.981665325
16657480	5.158045693
16657492	4.871981125
16657506	5.590373507
16657509	3.536017723
16657514	5.553315051
16657527	5.340520515
16657529	5.047647475
16657534	5.467530367
16657554	5.680837706
16657572	5.99821826
16657594	6.16127488
16657598	6.101692215
16657647	4.259909434
16657650	5.363826482
16657652	3.236555088

Total number of rows: 29329

Table truncated, full table size 598 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1588848_Pt7-BASELINE.ga.CEL.gz	5.2 Mb	(ftp)(http)	CEL
Processed data included within Sample table